HBQ1 protein (Procavia capensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

HBQ1

Hemoglobin subunit theta 1. (110 aa)

Predicted Functional Partners:

ENSPCAP00000009766

0.966

ENSPCAP00000014913

0.962

ENSPCAP00000016128

0.962

ENSPCAP00000007335

0.954

ENSPCAP00000014062

0.929

ENSPCAP00000007050

0.885

ENSPCAP00000001583

0.845

CYB5R4

0.726

EPB42

0.697

APOB

0.622

Your Current Organism:

Procavia capensis

NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APOB	ENSPCAP00000001583	ENSPCAP00000003763	ENSPCAP00000001583	Apolipoprotein B.	annotation not available	0.625
APOB	ENSPCAP00000007335	ENSPCAP00000003763	ENSPCAP00000007335	Apolipoprotein B.	annotation not available	0.554
APOB	ENSPCAP00000009766	ENSPCAP00000003763	ENSPCAP00000009766	Apolipoprotein B.	annotation not available	0.553
APOB	ENSPCAP00000014062	ENSPCAP00000003763	ENSPCAP00000014062	Apolipoprotein B.	annotation not available	0.554
APOB	ENSPCAP00000014913	ENSPCAP00000003763	ENSPCAP00000014913	Apolipoprotein B.	annotation not available	0.649
APOB	ENSPCAP00000016128	ENSPCAP00000003763	ENSPCAP00000016128	Apolipoprotein B.	annotation not available	0.649
APOB	HBQ1	ENSPCAP00000003763	ENSPCAP00000001594	Apolipoprotein B.	Hemoglobin subunit theta 1.	0.622
CYB5R4	ENSPCAP00000001583	ENSPCAP00000003426	ENSPCAP00000001583	Cytochrome b5 reductase 4.	annotation not available	0.726
CYB5R4	ENSPCAP00000007335	ENSPCAP00000003426	ENSPCAP00000007335	Cytochrome b5 reductase 4.	annotation not available	0.726
CYB5R4	ENSPCAP00000014062	ENSPCAP00000003426	ENSPCAP00000014062	Cytochrome b5 reductase 4.	annotation not available	0.726
CYB5R4	ENSPCAP00000014913	ENSPCAP00000003426	ENSPCAP00000014913	Cytochrome b5 reductase 4.	annotation not available	0.726
CYB5R4	ENSPCAP00000016128	ENSPCAP00000003426	ENSPCAP00000016128	Cytochrome b5 reductase 4.	annotation not available	0.726
CYB5R4	HBQ1	ENSPCAP00000003426	ENSPCAP00000001594	Cytochrome b5 reductase 4.	Hemoglobin subunit theta 1.	0.726
ENSPCAP00000001583	APOB	ENSPCAP00000001583	ENSPCAP00000003763	annotation not available	Apolipoprotein B.	0.625
ENSPCAP00000001583	CYB5R4	ENSPCAP00000001583	ENSPCAP00000003426	annotation not available	Cytochrome b5 reductase 4.	0.726
ENSPCAP00000001583	ENSPCAP00000007050	ENSPCAP00000001583	ENSPCAP00000007050	annotation not available	annotation not available	0.901
ENSPCAP00000001583	ENSPCAP00000007335	ENSPCAP00000001583	ENSPCAP00000007335	annotation not available	annotation not available	0.977
ENSPCAP00000001583	ENSPCAP00000009766	ENSPCAP00000001583	ENSPCAP00000009766	annotation not available	annotation not available	0.984
ENSPCAP00000001583	ENSPCAP00000014062	ENSPCAP00000001583	ENSPCAP00000014062	annotation not available	annotation not available	0.969
ENSPCAP00000001583	ENSPCAP00000014913	ENSPCAP00000001583	ENSPCAP00000014913	annotation not available	annotation not available	0.999