RAG1 protein (Procavia capensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RAG1

Recombination activating 1. (1044 aa)

Predicted Functional Partners:

ITSN2

0.972

ENSPCAP00000014229

0.942

ENSPCAP00000002051

0.891

CYTB

0.876

ENSPCAP00000000518

0.862

BARD1

0.827

ENSPCAP00000004702

0.825

ENSPCAP00000009224

0.824

TMEM189-UBE2V1

0.815

PLA2G4A

0.803

Your Current Organism:

Procavia capensis

NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BARD1	CYTB	ENSPCAP00000014180	ENSPCAP00000016144	BRCA1 associated RING domain 1.	Cytochrome b.	0.454
BARD1	ENSPCAP00000000518	ENSPCAP00000014180	ENSPCAP00000000518	BRCA1 associated RING domain 1.	annotation not available	0.470
BARD1	ENSPCAP00000004702	ENSPCAP00000014180	ENSPCAP00000004702	BRCA1 associated RING domain 1.	annotation not available	0.988
BARD1	ENSPCAP00000009224	ENSPCAP00000014180	ENSPCAP00000009224	BRCA1 associated RING domain 1.	annotation not available	0.977
BARD1	ENSPCAP00000014229	ENSPCAP00000014180	ENSPCAP00000014229	BRCA1 associated RING domain 1.	annotation not available	0.832
BARD1	PLA2G4A	ENSPCAP00000014180	ENSPCAP00000007462	BRCA1 associated RING domain 1.	Phospholipase A2 group IVA.	0.521
BARD1	RAG1	ENSPCAP00000014180	ENSPCAP00000001596	BRCA1 associated RING domain 1.	Recombination activating 1.	0.827
BARD1	TMEM189-UBE2V1	ENSPCAP00000014180	ENSPCAP00000011304	BRCA1 associated RING domain 1.	TMEM189-UBE2V1 readthrough.	0.817
CYTB	BARD1	ENSPCAP00000016144	ENSPCAP00000014180	Cytochrome b.	BRCA1 associated RING domain 1.	0.454
CYTB	ENSPCAP00000000518	ENSPCAP00000016144	ENSPCAP00000000518	Cytochrome b.	annotation not available	0.953
CYTB	ENSPCAP00000002051	ENSPCAP00000016144	ENSPCAP00000002051	Cytochrome b.	annotation not available	0.441
CYTB	RAG1	ENSPCAP00000016144	ENSPCAP00000001596	Cytochrome b.	Recombination activating 1.	0.876
ENSPCAP00000000518	BARD1	ENSPCAP00000000518	ENSPCAP00000014180	annotation not available	BRCA1 associated RING domain 1.	0.470
ENSPCAP00000000518	CYTB	ENSPCAP00000000518	ENSPCAP00000016144	annotation not available	Cytochrome b.	0.953
ENSPCAP00000000518	RAG1	ENSPCAP00000000518	ENSPCAP00000001596	annotation not available	Recombination activating 1.	0.862
ENSPCAP00000002051	CYTB	ENSPCAP00000002051	ENSPCAP00000016144	annotation not available	Cytochrome b.	0.441
ENSPCAP00000002051	ENSPCAP00000014229	ENSPCAP00000002051	ENSPCAP00000014229	annotation not available	annotation not available	0.416
ENSPCAP00000002051	RAG1	ENSPCAP00000002051	ENSPCAP00000001596	annotation not available	Recombination activating 1.	0.891
ENSPCAP00000004702	BARD1	ENSPCAP00000004702	ENSPCAP00000014180	annotation not available	BRCA1 associated RING domain 1.	0.988
ENSPCAP00000004702	ENSPCAP00000009224	ENSPCAP00000004702	ENSPCAP00000009224	annotation not available	annotation not available	0.993