BCL7B protein (Procavia capensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

BCL7B

BAF chromatin remodeling complex subunit BCL7B. (193 aa)

Predicted Functional Partners:

PBRM1

0.979

ENSPCAP00000004559

0.979

ACTL6B

0.979

ACTL6A

0.979

ARID2

0.978

SMARCE1

0.977

ENSPCAP00000008010

0.977

ENSPCAP00000008517

0.974

SMARCD2

0.967

SMARCD3

0.967

Your Current Organism:

Procavia capensis

NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACTL6A	ARID2	ENSPCAP00000015403	ENSPCAP00000014366	Actin like 6A.	AT-rich interaction domain 2.	0.985
ACTL6A	BCL7B	ENSPCAP00000015403	ENSPCAP00000001622	Actin like 6A.	BAF chromatin remodeling complex subunit BCL7B.	0.979
ACTL6A	ENSPCAP00000004559	ENSPCAP00000015403	ENSPCAP00000004559	Actin like 6A.	annotation not available	0.994
ACTL6A	ENSPCAP00000008010	ENSPCAP00000015403	ENSPCAP00000008010	Actin like 6A.	annotation not available	0.979
ACTL6A	ENSPCAP00000008517	ENSPCAP00000015403	ENSPCAP00000008517	Actin like 6A.	annotation not available	0.987
ACTL6A	PBRM1	ENSPCAP00000015403	ENSPCAP00000001837	Actin like 6A.	Polybromo 1.	0.989
ACTL6A	SMARCD2	ENSPCAP00000015403	ENSPCAP00000002552	Actin like 6A.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2.	0.991
ACTL6A	SMARCD3	ENSPCAP00000015403	ENSPCAP00000011711	Actin like 6A.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3.	0.987
ACTL6A	SMARCE1	ENSPCAP00000015403	ENSPCAP00000001160	Actin like 6A.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1.	0.993
ACTL6B	ARID2	ENSPCAP00000006036	ENSPCAP00000014366	Actin like 6B.	AT-rich interaction domain 2.	0.985
ACTL6B	BCL7B	ENSPCAP00000006036	ENSPCAP00000001622	Actin like 6B.	BAF chromatin remodeling complex subunit BCL7B.	0.979
ACTL6B	ENSPCAP00000004559	ENSPCAP00000006036	ENSPCAP00000004559	Actin like 6B.	annotation not available	0.994
ACTL6B	ENSPCAP00000008010	ENSPCAP00000006036	ENSPCAP00000008010	Actin like 6B.	annotation not available	0.979
ACTL6B	ENSPCAP00000008517	ENSPCAP00000006036	ENSPCAP00000008517	Actin like 6B.	annotation not available	0.987
ACTL6B	PBRM1	ENSPCAP00000006036	ENSPCAP00000001837	Actin like 6B.	Polybromo 1.	0.989
ACTL6B	SMARCD2	ENSPCAP00000006036	ENSPCAP00000002552	Actin like 6B.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2.	0.991
ACTL6B	SMARCD3	ENSPCAP00000006036	ENSPCAP00000011711	Actin like 6B.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3.	0.987
ACTL6B	SMARCE1	ENSPCAP00000006036	ENSPCAP00000001160	Actin like 6B.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1.	0.993
ARID2	ACTL6A	ENSPCAP00000014366	ENSPCAP00000015403	AT-rich interaction domain 2.	Actin like 6A.	0.985
ARID2	ACTL6B	ENSPCAP00000014366	ENSPCAP00000006036	AT-rich interaction domain 2.	Actin like 6B.	0.985