STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FUBP3Far upstream element binding protein 3. (567 aa)    
Predicted Functional Partners:
FUBP1
Far upstream element binding protein 1.
   
   0.985
ENSPCAP00000007299
annotation not available
   
 
 0.962
KHSRP
KH-type splicing regulatory protein.
   
   0.947
SUMF2
Sulfatase modifying factor 2.
    
   0.891
PUF60
poly(U) binding splicing factor 60.
   
 
 0.873
PUM1
Pumilio RNA binding family member 1.
   
 
 0.811
KHDRBS1
KH RNA binding domain containing, signal transduction associated 1.
   
 
 0.803
KHDRBS2
KH RNA binding domain containing, signal transduction associated 2.
   
 
 0.781
ENSPCAP00000004811
annotation not available
   
 
 0.772
DAZAP1
DAZ associated protein 1.
   
 
 0.715
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.