STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LGI3Leucine rich repeat LGI family member 3. (548 aa)    
Predicted Functional Partners:
ENSPCAP00000014868
annotation not available
    
 0.766
ADAM22
ADAM metallopeptidase domain 22.
   
 
 0.760
ADAM23
ADAM metallopeptidase domain 23.
   
 
 0.740
TEP1
Telomerase associated protein 1.
    
 0.663
SFTPC
Surfactant protein C.
   
  
 0.658
ENSPCAP00000001574
annotation not available
    
 
 0.614
SETDB1
SET domain bifurcated histone lysine methyltransferase 1.
    
  0.531
ENSPCAP00000009568
annotation not available
    
  0.531
ENSPCAP00000003757
annotation not available
    
 0.522
CHMP7
Charged multivesicular body protein 7.
      
 0.520
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.