Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SFTPCSurfactant protein C. (196 aa)    
Predicted Functional Partners:
SFTPB
Surfactant protein B.
   
 
 0.998
ENSPCAP00000015454
annotation not available
   
 
 0.970
SCGB3A2
Secretoglobin family 3A member 2.
   
  
 0.955
ENSPCAP00000015390
annotation not available
   
 
 0.955
TMEM79
Transmembrane protein 79.
    
   0.954
APP
Amyloid beta precursor protein.
    
   0.921
AGER
Advanced glycosylation end-product specific receptor.
   
  
 0.914
CXCL9
C-X-C motif chemokine ligand 9.
    
   0.888
ENSPCAP00000004180
annotation not available
   
  
 0.885
FOXJ1
Forkhead box J1.
      
 0.849
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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