STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALAS25'-aminolevulinate synthase 2. (576 aa)    
Predicted Functional Partners:
ALAD
Aminolevulinate dehydratase.
    
 0.942
SARDH
Sarcosine dehydrogenase.
  
 
 0.884
GATM
Glycine amidinotransferase.
     
 0.882
SHMT1
Serine hydroxymethyltransferase 1.
  
 
 0.880
DAO
D-amino acid oxidase.
    
 0.876
PIPOX
Pipecolic acid and sarcosine oxidase.
    
 0.875
GLDC
Glycine decarboxylase.
  
 
 0.871
ENSPCAP00000000954
annotation not available
    
 0.863
GNMT
Glycine N-methyltransferase.
     
 0.863
AGXT2
Alanine--glyoxylate aminotransferase 2.
    
 0.862
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.