ENSPCAP00000001710 protein (Procavia capensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSPCAP00000001710

annotation not available (300 aa)

Predicted Functional Partners:

ENSPCAP00000010330

0.947

ENSPCAP00000010334

0.681

APEX1

0.653

ENSPCAP00000006494

0.633

MORN1

0.631

LRCH1

0.629

SPEF2

0.618

ENSPCAP00000002621

0.615

CALML6

0.587

TMEM52

0.586

Your Current Organism:

Procavia capensis

NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APEX1	ENSPCAP00000001710	ENSPCAP00000009638	ENSPCAP00000001710	Apurinic/apyrimidinic endodeoxyribonuclease 1.	annotation not available	0.653
APEX1	ENSPCAP00000010330	ENSPCAP00000009638	ENSPCAP00000010330	Apurinic/apyrimidinic endodeoxyribonuclease 1.	annotation not available	0.653
CALML6	ENSPCAP00000001710	ENSPCAP00000001782	ENSPCAP00000001710	Calmodulin like 6.	annotation not available	0.587
CALML6	ENSPCAP00000002621	ENSPCAP00000001782	ENSPCAP00000002621	Calmodulin like 6.	annotation not available	0.500
CALML6	ENSPCAP00000010330	ENSPCAP00000001782	ENSPCAP00000010330	Calmodulin like 6.	annotation not available	0.587
CALML6	ENSPCAP00000010334	ENSPCAP00000001782	ENSPCAP00000010334	Calmodulin like 6.	annotation not available	0.608
CALML6	LRCH1	ENSPCAP00000001782	ENSPCAP00000012067	Calmodulin like 6.	Leucine rich repeats and calponin homology domain containing 1.	0.473
CALML6	MORN1	ENSPCAP00000001782	ENSPCAP00000010214	Calmodulin like 6.	MORN repeat containing 1.	0.571
CALML6	TMEM52	ENSPCAP00000001782	ENSPCAP00000001728	Calmodulin like 6.	Transmembrane protein 52.	0.564
ENSPCAP00000001710	APEX1	ENSPCAP00000001710	ENSPCAP00000009638	annotation not available	Apurinic/apyrimidinic endodeoxyribonuclease 1.	0.653
ENSPCAP00000001710	CALML6	ENSPCAP00000001710	ENSPCAP00000001782	annotation not available	Calmodulin like 6.	0.587
ENSPCAP00000001710	ENSPCAP00000002621	ENSPCAP00000001710	ENSPCAP00000002621	annotation not available	annotation not available	0.615
ENSPCAP00000001710	ENSPCAP00000006494	ENSPCAP00000001710	ENSPCAP00000006494	annotation not available	annotation not available	0.633
ENSPCAP00000001710	ENSPCAP00000010330	ENSPCAP00000001710	ENSPCAP00000010330	annotation not available	annotation not available	0.947
ENSPCAP00000001710	ENSPCAP00000010334	ENSPCAP00000001710	ENSPCAP00000010334	annotation not available	annotation not available	0.681
ENSPCAP00000001710	LRCH1	ENSPCAP00000001710	ENSPCAP00000012067	annotation not available	Leucine rich repeats and calponin homology domain containing 1.	0.629
ENSPCAP00000001710	MORN1	ENSPCAP00000001710	ENSPCAP00000010214	annotation not available	MORN repeat containing 1.	0.631
ENSPCAP00000001710	SPEF2	ENSPCAP00000001710	ENSPCAP00000013828	annotation not available	Sperm flagellar 2.	0.618
ENSPCAP00000001710	TMEM52	ENSPCAP00000001710	ENSPCAP00000001728	annotation not available	Transmembrane protein 52.	0.586
ENSPCAP00000002621	CALML6	ENSPCAP00000002621	ENSPCAP00000001782	annotation not available	Calmodulin like 6.	0.500