STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HELZHelicase with zinc finger. (1934 aa)    
Predicted Functional Partners:
RC3H2
Ring finger and CCCH-type domains 2.
   
 
 0.910
RC3H1
Ring finger and CCCH-type domains 1.
   
 
 0.815
SMYD2
SET and MYND domain containing 2.
    
 
 0.796
SMYD3
SET and MYND domain containing 3.
    
 
 0.796
CNOT1
CCR4-NOT transcription complex subunit 1.
   
 
 0.781
RACK1
Receptor for activated C kinase 1.
    
   0.768
ATXN2L
Ataxin 2 like.
   
 
 0.744
PAN3
poly(A) specific ribonuclease subunit PAN3.
   
   0.725
PATL1
PAT1 homolog 1, processing body mRNA decay factor.
    
 
 0.692
LARP4
La ribonucleoprotein 4.
    
   0.675
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.