LIPH protein (Procavia capensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LIPH

Lipase H. (451 aa)

Predicted Functional Partners:

ENSPCAP00000006681

0.675

GLDC

0.672

ENSPCAP00000005371

0.672

ENSPCAP00000005461

0.659

PDHB

0.637

ENSPCAP00000010878

0.625

SEPHS1

0.610

ENSPCAP00000009191

0.598

OGDH

0.590

ENSPCAP00000003609

0.590

Your Current Organism:

Procavia capensis

NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPCAP00000003609	ENSPCAP00000005371	ENSPCAP00000003609	ENSPCAP00000005371	annotation not available	annotation not available	0.743
ENSPCAP00000003609	ENSPCAP00000005461	ENSPCAP00000003609	ENSPCAP00000005461	annotation not available	annotation not available	0.921
ENSPCAP00000003609	ENSPCAP00000010878	ENSPCAP00000003609	ENSPCAP00000010878	annotation not available	annotation not available	0.948
ENSPCAP00000003609	LIPH	ENSPCAP00000003609	ENSPCAP00000001718	annotation not available	Lipase H.	0.590
ENSPCAP00000003609	OGDH	ENSPCAP00000003609	ENSPCAP00000001751	annotation not available	Oxoglutarate dehydrogenase.	0.841
ENSPCAP00000003609	PDHB	ENSPCAP00000003609	ENSPCAP00000015521	annotation not available	Pyruvate dehydrogenase E1 beta subunit.	0.981
ENSPCAP00000005371	ENSPCAP00000003609	ENSPCAP00000005371	ENSPCAP00000003609	annotation not available	annotation not available	0.743
ENSPCAP00000005371	GLDC	ENSPCAP00000005371	ENSPCAP00000003645	annotation not available	Glycine decarboxylase.	0.999
ENSPCAP00000005371	LIPH	ENSPCAP00000005371	ENSPCAP00000001718	annotation not available	Lipase H.	0.672
ENSPCAP00000005371	OGDH	ENSPCAP00000005371	ENSPCAP00000001751	annotation not available	Oxoglutarate dehydrogenase.	0.743
ENSPCAP00000005371	PDHB	ENSPCAP00000005371	ENSPCAP00000015521	annotation not available	Pyruvate dehydrogenase E1 beta subunit.	0.416
ENSPCAP00000005461	ENSPCAP00000003609	ENSPCAP00000005461	ENSPCAP00000003609	annotation not available	annotation not available	0.921
ENSPCAP00000005461	ENSPCAP00000010878	ENSPCAP00000005461	ENSPCAP00000010878	annotation not available	annotation not available	0.999
ENSPCAP00000005461	LIPH	ENSPCAP00000005461	ENSPCAP00000001718	annotation not available	Lipase H.	0.659
ENSPCAP00000005461	OGDH	ENSPCAP00000005461	ENSPCAP00000001751	annotation not available	Oxoglutarate dehydrogenase.	0.921
ENSPCAP00000005461	PDHB	ENSPCAP00000005461	ENSPCAP00000015521	annotation not available	Pyruvate dehydrogenase E1 beta subunit.	0.999
ENSPCAP00000006681	LIPH	ENSPCAP00000006681	ENSPCAP00000001718	annotation not available	Lipase H.	0.675
ENSPCAP00000009191	LIPH	ENSPCAP00000009191	ENSPCAP00000001718	annotation not available	Lipase H.	0.598
ENSPCAP00000010878	ENSPCAP00000003609	ENSPCAP00000010878	ENSPCAP00000003609	annotation not available	annotation not available	0.948
ENSPCAP00000010878	ENSPCAP00000005461	ENSPCAP00000010878	ENSPCAP00000005461	annotation not available	annotation not available	0.999