TMEM52 protein (Procavia capensis) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

TMEM52

Transmembrane protein 52. (153 aa)

Predicted Functional Partners:

LRCH1

0.668

ENSPCAP00000014487

0.647

TMTC3

0.593

ENSPCAP00000000539

0.591

ENSPCAP00000001710

0.586

ENSPCAP00000010330

0.586

SINHCAF

0.586

SLC45A1

0.585

MORN1

0.583

NUDT22

0.579

Your Current Organism:

Procavia capensis

NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPCAP00000000539	SINHCAF	ENSPCAP00000000539	ENSPCAP00000012170	annotation not available	SIN3-HDAC complex associated factor.	0.567
ENSPCAP00000000539	TMEM52	ENSPCAP00000000539	ENSPCAP00000001728	annotation not available	Transmembrane protein 52.	0.591
ENSPCAP00000001710	ENSPCAP00000010330	ENSPCAP00000001710	ENSPCAP00000010330	annotation not available	annotation not available	0.947
ENSPCAP00000001710	LRCH1	ENSPCAP00000001710	ENSPCAP00000012067	annotation not available	Leucine rich repeats and calponin homology domain containing 1.	0.629
ENSPCAP00000001710	MORN1	ENSPCAP00000001710	ENSPCAP00000010214	annotation not available	MORN repeat containing 1.	0.631
ENSPCAP00000001710	SLC45A1	ENSPCAP00000001710	ENSPCAP00000001157	annotation not available	Solute carrier family 45 member 1.	0.553
ENSPCAP00000001710	TMEM52	ENSPCAP00000001710	ENSPCAP00000001728	annotation not available	Transmembrane protein 52.	0.586
ENSPCAP00000001710	TMTC3	ENSPCAP00000001710	ENSPCAP00000006161	annotation not available	Transmembrane O-mannosyltransferase targeting cadherins 3.	0.561
ENSPCAP00000010330	ENSPCAP00000001710	ENSPCAP00000010330	ENSPCAP00000001710	annotation not available	annotation not available	0.947
ENSPCAP00000010330	LRCH1	ENSPCAP00000010330	ENSPCAP00000012067	annotation not available	Leucine rich repeats and calponin homology domain containing 1.	0.629
ENSPCAP00000010330	MORN1	ENSPCAP00000010330	ENSPCAP00000010214	annotation not available	MORN repeat containing 1.	0.631
ENSPCAP00000010330	SLC45A1	ENSPCAP00000010330	ENSPCAP00000001157	annotation not available	Solute carrier family 45 member 1.	0.553
ENSPCAP00000010330	TMEM52	ENSPCAP00000010330	ENSPCAP00000001728	annotation not available	Transmembrane protein 52.	0.586
ENSPCAP00000010330	TMTC3	ENSPCAP00000010330	ENSPCAP00000006161	annotation not available	Transmembrane O-mannosyltransferase targeting cadherins 3.	0.561
ENSPCAP00000014487	LRCH1	ENSPCAP00000014487	ENSPCAP00000012067	annotation not available	Leucine rich repeats and calponin homology domain containing 1.	0.611
ENSPCAP00000014487	MORN1	ENSPCAP00000014487	ENSPCAP00000010214	annotation not available	MORN repeat containing 1.	0.462
ENSPCAP00000014487	TMEM52	ENSPCAP00000014487	ENSPCAP00000001728	annotation not available	Transmembrane protein 52.	0.647
LRCH1	ENSPCAP00000001710	ENSPCAP00000012067	ENSPCAP00000001710	Leucine rich repeats and calponin homology domain containing 1.	annotation not available	0.629
LRCH1	ENSPCAP00000010330	ENSPCAP00000012067	ENSPCAP00000010330	Leucine rich repeats and calponin homology domain containing 1.	annotation not available	0.629
LRCH1	ENSPCAP00000014487	ENSPCAP00000012067	ENSPCAP00000014487	Leucine rich repeats and calponin homology domain containing 1.	annotation not available	0.611