FAM71D protein (Procavia capensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

FAM71D

Family with sequence similarity 71 member D. (405 aa)

Predicted Functional Partners:

ENSPCAP00000010944

0.769

ENSPCAP00000006482

0.606

ENSPCAP00000009374

0.588

SYCE3

0.584

ENSPCAP00000000682

0.575

ENSPCAP00000004653

0.565

ENSPCAP00000004704

0.565

SOX30

0.565

SLC26A8

0.562

SPATA16

0.505

Your Current Organism:

Procavia capensis

NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPCAP00000000682	ENSPCAP00000004653	ENSPCAP00000000682	ENSPCAP00000004653	annotation not available	annotation not available	0.572
ENSPCAP00000000682	ENSPCAP00000004704	ENSPCAP00000000682	ENSPCAP00000004704	annotation not available	annotation not available	0.572
ENSPCAP00000000682	ENSPCAP00000009374	ENSPCAP00000000682	ENSPCAP00000009374	annotation not available	annotation not available	0.576
ENSPCAP00000000682	FAM71D	ENSPCAP00000000682	ENSPCAP00000001735	annotation not available	Family with sequence similarity 71 member D.	0.575
ENSPCAP00000000682	SPATA16	ENSPCAP00000000682	ENSPCAP00000013581	annotation not available	Spermatogenesis associated 16.	0.769
ENSPCAP00000004653	ENSPCAP00000000682	ENSPCAP00000004653	ENSPCAP00000000682	annotation not available	annotation not available	0.572
ENSPCAP00000004653	ENSPCAP00000009374	ENSPCAP00000004653	ENSPCAP00000009374	annotation not available	annotation not available	0.592
ENSPCAP00000004653	FAM71D	ENSPCAP00000004653	ENSPCAP00000001735	annotation not available	Family with sequence similarity 71 member D.	0.565
ENSPCAP00000004653	SPATA16	ENSPCAP00000004653	ENSPCAP00000013581	annotation not available	Spermatogenesis associated 16.	0.573
ENSPCAP00000004704	ENSPCAP00000000682	ENSPCAP00000004704	ENSPCAP00000000682	annotation not available	annotation not available	0.572
ENSPCAP00000004704	ENSPCAP00000009374	ENSPCAP00000004704	ENSPCAP00000009374	annotation not available	annotation not available	0.592
ENSPCAP00000004704	FAM71D	ENSPCAP00000004704	ENSPCAP00000001735	annotation not available	Family with sequence similarity 71 member D.	0.565
ENSPCAP00000004704	SPATA16	ENSPCAP00000004704	ENSPCAP00000013581	annotation not available	Spermatogenesis associated 16.	0.573
ENSPCAP00000006482	ENSPCAP00000010944	ENSPCAP00000006482	ENSPCAP00000010944	annotation not available	annotation not available	0.561
ENSPCAP00000006482	FAM71D	ENSPCAP00000006482	ENSPCAP00000001735	annotation not available	Family with sequence similarity 71 member D.	0.606
ENSPCAP00000006482	SPATA16	ENSPCAP00000006482	ENSPCAP00000013581	annotation not available	Spermatogenesis associated 16.	0.414
ENSPCAP00000009374	ENSPCAP00000000682	ENSPCAP00000009374	ENSPCAP00000000682	annotation not available	annotation not available	0.576
ENSPCAP00000009374	ENSPCAP00000004653	ENSPCAP00000009374	ENSPCAP00000004653	annotation not available	annotation not available	0.592
ENSPCAP00000009374	ENSPCAP00000004704	ENSPCAP00000009374	ENSPCAP00000004704	annotation not available	annotation not available	0.592
ENSPCAP00000009374	ENSPCAP00000010944	ENSPCAP00000009374	ENSPCAP00000010944	annotation not available	annotation not available	0.605