Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TCERG1Transcription elongation regulator 1. (1098 aa)    
Predicted Functional Partners:
CDC40
Cell division cycle 40.
    
 0.981
RBM25
RNA binding motif protein 25.
   
 
 0.978
PRPF38A
pre-mRNA processing factor 38A.
   
 0.966
DDX46
DEAD-box helicase 46.
   
 0.963
SF3A2
Splicing factor 3a subunit 2.
    
 0.962
BUD31
BUD31 homolog.
    
 0.957
U2SURP
U2 snRNP associated SURP domain containing.
   
   0.956
ENSPCAP00000001851
annotation not available
   
   0.955
SF3A1
Splicing factor 3a subunit 1.
   
  0.951
RBM22
RNA binding motif protein 22.
   
 0.951
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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