STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPCAP00000001769annotation not available (363 aa)    
Predicted Functional Partners:
PRPF4
pre-mRNA processing factor 4.
    
   0.954
PRPF3
pre-mRNA processing factor 3.
   
   0.950
DHX15
DEAH-box helicase 15.
    
 
 0.940
ENSPCAP00000001805
annotation not available
   
  
 0.819
KIAA1328
KIAA1328.
    
   0.797
LSM5
LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
   0.783
MTA2
Metastasis associated 1 family member 2.
   
   0.727
PRPF8
pre-mRNA processing factor 8.
    
   0.704
MARCHF6
Membrane associated ring-CH-type finger 6.
   
  
 0.686
DNAJC10
DnaJ heat shock protein family (Hsp40) member C10.
   
  
 0.686
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.