STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
COL5A3Collagen type V alpha 3 chain. (1719 aa)    
Predicted Functional Partners:
COL5A2
Collagen type V alpha 2 chain.
   
  0.828
ENSPCAP00000006712
annotation not available
   
 0.828
ENSPCAP00000007645
annotation not available
   
 0.807
LUM
Lumican.
   
 0.794
COL1A2
Collagen type I alpha 2 chain.
   
  0.789
COL1A1
Collagen type I alpha 1 chain.
   
  0.786
COL2A1
Collagen type II alpha 1 chain.
   
 0.770
COL3A1
Collagen type III alpha 1 chain.
   
 
  0.757
SERPINH1
Serpin family H member 1.
   
 0.715
MYSM1
Myb like, SWIRM and MPN domains 1.
    
 0.696
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.