ENSPCAP00000001795 protein (Procavia capensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

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[Homology]

Score

ENSPCAP00000001795

annotation not available (1717 aa)

Predicted Functional Partners:

RAB27B

0.980

RAB27A

0.980

ENSPCAP00000015445

0.753

TBC1D10A

0.696

ENSPCAP00000003340

0.694

MYO5A

0.694

LHFPL2

0.678

PHACTR3

0.675

ENSPCAP00000006602

0.619

ENSPCAP00000004533

0.609

Your Current Organism:

Procavia capensis

NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPCAP00000001795	ENSPCAP00000003340	ENSPCAP00000001795	ENSPCAP00000003340	annotation not available	annotation not available	0.694
ENSPCAP00000001795	ENSPCAP00000004533	ENSPCAP00000001795	ENSPCAP00000004533	annotation not available	annotation not available	0.609
ENSPCAP00000001795	ENSPCAP00000006602	ENSPCAP00000001795	ENSPCAP00000006602	annotation not available	annotation not available	0.619
ENSPCAP00000001795	ENSPCAP00000015445	ENSPCAP00000001795	ENSPCAP00000015445	annotation not available	annotation not available	0.753
ENSPCAP00000001795	LHFPL2	ENSPCAP00000001795	ENSPCAP00000012999	annotation not available	LHFPL tetraspan subfamily member 2.	0.678
ENSPCAP00000001795	MYO5A	ENSPCAP00000001795	ENSPCAP00000008778	annotation not available	Myosin VA.	0.694
ENSPCAP00000001795	PHACTR3	ENSPCAP00000001795	ENSPCAP00000000902	annotation not available	Phosphatase and actin regulator 3.	0.675
ENSPCAP00000001795	RAB27A	ENSPCAP00000001795	ENSPCAP00000014638	annotation not available	RAB27A, member RAS oncogene family.	0.980
ENSPCAP00000001795	RAB27B	ENSPCAP00000001795	ENSPCAP00000013410	annotation not available	RAB27B, member RAS oncogene family.	0.980
ENSPCAP00000001795	TBC1D10A	ENSPCAP00000001795	ENSPCAP00000003010	annotation not available	TBC1 domain family member 10A.	0.696
ENSPCAP00000003340	ENSPCAP00000001795	ENSPCAP00000003340	ENSPCAP00000001795	annotation not available	annotation not available	0.694
ENSPCAP00000003340	ENSPCAP00000015445	ENSPCAP00000003340	ENSPCAP00000015445	annotation not available	annotation not available	0.757
ENSPCAP00000003340	MYO5A	ENSPCAP00000003340	ENSPCAP00000008778	annotation not available	Myosin VA.	0.841
ENSPCAP00000003340	RAB27A	ENSPCAP00000003340	ENSPCAP00000014638	annotation not available	RAB27A, member RAS oncogene family.	0.816
ENSPCAP00000003340	RAB27B	ENSPCAP00000003340	ENSPCAP00000013410	annotation not available	RAB27B, member RAS oncogene family.	0.816
ENSPCAP00000004533	ENSPCAP00000001795	ENSPCAP00000004533	ENSPCAP00000001795	annotation not available	annotation not available	0.609
ENSPCAP00000004533	ENSPCAP00000006602	ENSPCAP00000004533	ENSPCAP00000006602	annotation not available	annotation not available	0.466
ENSPCAP00000004533	LHFPL2	ENSPCAP00000004533	ENSPCAP00000012999	annotation not available	LHFPL tetraspan subfamily member 2.	0.611
ENSPCAP00000006602	ENSPCAP00000001795	ENSPCAP00000006602	ENSPCAP00000001795	annotation not available	annotation not available	0.619
ENSPCAP00000006602	ENSPCAP00000004533	ENSPCAP00000006602	ENSPCAP00000004533	annotation not available	annotation not available	0.466