STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HMGB3High mobility group box 3. (200 aa)    
Predicted Functional Partners:
AGER
Advanced glycosylation end-product specific receptor.
    
 0.965
ENSPCAP00000002051
annotation not available
   
   0.959
BECN1
Beclin 1.
    
 0.945
TLR1
Toll like receptor 1.
    
 0.871
ENSPCAP00000012401
annotation not available
    
 0.871
SEC23IP
SEC23 interacting protein.
   
   0.835
LY96
Lymphocyte antigen 96.
    
 0.797
ENSPCAP00000004521
annotation not available
   
  
 0.769
TP53
Tumor protein p53.
   
 
 0.767
MAPT
Microtubule associated protein tau.
    
 
 0.731
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.