STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMGB3High mobility group box 3. (200 aa)    
Predicted Functional Partners:
BECN1
Beclin 1.
    
 0.830
ACTR8
Actin related protein 8.
    
 0.796
GTF2H1
General transcription factor IIH subunit 1.
    
 0.790
GTF2H3
General transcription factor IIH subunit 3.
    
 0.783
RUVBL1
RuvB like AAA ATPase 1.
    
 0.749
POLRMT
RNA polymerase mitochondrial.
    
 0.747
GTF2H4
General transcription factor IIH subunit 4.
    
 0.745
POLR1E
RNA polymerase I subunit E.
    
 0.744
ENSPCAP00000010342
annotation not available
    
 0.739
ACTR5
Actin related protein 5.
    
 0.733
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.