MT3 protein (Procavia capensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

MT3

Metallothionein 3. (57 aa)

Predicted Functional Partners:

ENSPCAP00000012420

0.786

ENSPCAP00000002859

0.669

CKM

0.650

ENSPCAP00000001945

0.615

ENSPCAP00000007607

0.598

ENSPCAP00000000393

0.591

CCS

0.584

VRK2

0.566

MN1

0.565

CP

0.562

Your Current Organism:

Procavia capensis

NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCS	CP	ENSPCAP00000003071	ENSPCAP00000015037	Copper chaperone for superoxide dismutase.	Ceruloplasmin.	0.670
CCS	ENSPCAP00000001945	ENSPCAP00000003071	ENSPCAP00000001945	Copper chaperone for superoxide dismutase.	annotation not available	0.931
CCS	ENSPCAP00000007607	ENSPCAP00000003071	ENSPCAP00000007607	Copper chaperone for superoxide dismutase.	annotation not available	0.954
CCS	ENSPCAP00000012420	ENSPCAP00000003071	ENSPCAP00000012420	Copper chaperone for superoxide dismutase.	annotation not available	0.474
CCS	MT3	ENSPCAP00000003071	ENSPCAP00000001815	Copper chaperone for superoxide dismutase.	Metallothionein 3.	0.584
CKM	ENSPCAP00000007607	ENSPCAP00000014965	ENSPCAP00000007607	Creatine kinase, M-type.	annotation not available	0.508
CKM	ENSPCAP00000012420	ENSPCAP00000014965	ENSPCAP00000012420	Creatine kinase, M-type.	annotation not available	0.487
CKM	MT3	ENSPCAP00000014965	ENSPCAP00000001815	Creatine kinase, M-type.	Metallothionein 3.	0.650
CP	CCS	ENSPCAP00000015037	ENSPCAP00000003071	Ceruloplasmin.	Copper chaperone for superoxide dismutase.	0.670
CP	ENSPCAP00000001945	ENSPCAP00000015037	ENSPCAP00000001945	Ceruloplasmin.	annotation not available	0.560
CP	ENSPCAP00000007607	ENSPCAP00000015037	ENSPCAP00000007607	Ceruloplasmin.	annotation not available	0.437
CP	ENSPCAP00000012420	ENSPCAP00000015037	ENSPCAP00000012420	Ceruloplasmin.	annotation not available	0.660
CP	MT3	ENSPCAP00000015037	ENSPCAP00000001815	Ceruloplasmin.	Metallothionein 3.	0.562
ENSPCAP00000000393	ENSPCAP00000012420	ENSPCAP00000000393	ENSPCAP00000012420	annotation not available	annotation not available	0.409
ENSPCAP00000000393	MT3	ENSPCAP00000000393	ENSPCAP00000001815	annotation not available	Metallothionein 3.	0.591
ENSPCAP00000001945	CCS	ENSPCAP00000001945	ENSPCAP00000003071	annotation not available	Copper chaperone for superoxide dismutase.	0.931
ENSPCAP00000001945	CP	ENSPCAP00000001945	ENSPCAP00000015037	annotation not available	Ceruloplasmin.	0.560
ENSPCAP00000001945	ENSPCAP00000007607	ENSPCAP00000001945	ENSPCAP00000007607	annotation not available	annotation not available	0.609
ENSPCAP00000001945	ENSPCAP00000012420	ENSPCAP00000001945	ENSPCAP00000012420	annotation not available	annotation not available	0.402
ENSPCAP00000001945	MT3	ENSPCAP00000001945	ENSPCAP00000001815	annotation not available	Metallothionein 3.	0.615