RPH3AL protein (Procavia capensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

RPH3AL

Rabphilin 3A like (without C2 domains). (204 aa)

Predicted Functional Partners:

ENSPCAP00000012761

0.914

ENSPCAP00000002802

0.913

DOC2A

0.912

CCDC83

0.866

RAB3D

0.769

SNAP25

0.721

SYT7

0.710

AFAP1L1

0.692

VPS53

0.692

GEMIN4

0.692

Your Current Organism:

Procavia capensis

NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFAP1L1	GEMIN4	ENSPCAP00000001637	ENSPCAP00000007365	Actin filament associated protein 1 like 1.	Gem nuclear organelle associated protein 4.	0.692
AFAP1L1	RPH3AL	ENSPCAP00000001637	ENSPCAP00000001830	Actin filament associated protein 1 like 1.	Rabphilin 3A like (without C2 domains).	0.692
AFAP1L1	VPS53	ENSPCAP00000001637	ENSPCAP00000003434	Actin filament associated protein 1 like 1.	VPS53 subunit of GARP complex.	0.775
CCDC83	RPH3AL	ENSPCAP00000011655	ENSPCAP00000001830	Coiled-coil domain containing 83.	Rabphilin 3A like (without C2 domains).	0.866
DOC2A	ENSPCAP00000002802	ENSPCAP00000000040	ENSPCAP00000002802	Double C2 domain alpha.	annotation not available	0.488
DOC2A	ENSPCAP00000012761	ENSPCAP00000000040	ENSPCAP00000012761	Double C2 domain alpha.	annotation not available	0.488
DOC2A	GEMIN4	ENSPCAP00000000040	ENSPCAP00000007365	Double C2 domain alpha.	Gem nuclear organelle associated protein 4.	0.405
DOC2A	RAB3D	ENSPCAP00000000040	ENSPCAP00000002015	Double C2 domain alpha.	RAB3D, member RAS oncogene family.	0.546
DOC2A	RPH3AL	ENSPCAP00000000040	ENSPCAP00000001830	Double C2 domain alpha.	Rabphilin 3A like (without C2 domains).	0.912
DOC2A	SNAP25	ENSPCAP00000000040	ENSPCAP00000013240	Double C2 domain alpha.	Synaptosome associated protein 25.	0.790
ENSPCAP00000002802	DOC2A	ENSPCAP00000002802	ENSPCAP00000000040	annotation not available	Double C2 domain alpha.	0.488
ENSPCAP00000002802	GEMIN4	ENSPCAP00000002802	ENSPCAP00000007365	annotation not available	Gem nuclear organelle associated protein 4.	0.405
ENSPCAP00000002802	RAB3D	ENSPCAP00000002802	ENSPCAP00000002015	annotation not available	RAB3D, member RAS oncogene family.	0.546
ENSPCAP00000002802	RPH3AL	ENSPCAP00000002802	ENSPCAP00000001830	annotation not available	Rabphilin 3A like (without C2 domains).	0.913
ENSPCAP00000002802	SNAP25	ENSPCAP00000002802	ENSPCAP00000013240	annotation not available	Synaptosome associated protein 25.	0.808
ENSPCAP00000012761	DOC2A	ENSPCAP00000012761	ENSPCAP00000000040	annotation not available	Double C2 domain alpha.	0.488
ENSPCAP00000012761	GEMIN4	ENSPCAP00000012761	ENSPCAP00000007365	annotation not available	Gem nuclear organelle associated protein 4.	0.405
ENSPCAP00000012761	RAB3D	ENSPCAP00000012761	ENSPCAP00000002015	annotation not available	RAB3D, member RAS oncogene family.	0.546
ENSPCAP00000012761	RPH3AL	ENSPCAP00000012761	ENSPCAP00000001830	annotation not available	Rabphilin 3A like (without C2 domains).	0.914
ENSPCAP00000012761	SNAP25	ENSPCAP00000012761	ENSPCAP00000013240	annotation not available	Synaptosome associated protein 25.	0.808