SNX2 protein (Procavia capensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SNX2

Sorting nexin 2. (503 aa)

Predicted Functional Partners:

SNX1

0.990

ENSPCAP00000000690

0.975

VPS35

0.966

VPS29

0.965

SNX5

0.937

VPS26A

0.937

SNX6

0.920

SNX32

0.920

ENSPCAP00000011121

0.891

IGF2R

0.794

Your Current Organism:

Procavia capensis

NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPCAP00000000690	IGF2R	ENSPCAP00000000690	ENSPCAP00000008636	annotation not available	Insulin like growth factor 2 receptor.	0.983
ENSPCAP00000000690	SNX1	ENSPCAP00000000690	ENSPCAP00000011302	annotation not available	Sorting nexin 1.	0.975
ENSPCAP00000000690	SNX2	ENSPCAP00000000690	ENSPCAP00000001868	annotation not available	Sorting nexin 2.	0.975
ENSPCAP00000000690	VPS29	ENSPCAP00000000690	ENSPCAP00000011203	annotation not available	VPS29 retromer complex component.	0.563
ENSPCAP00000000690	VPS35	ENSPCAP00000000690	ENSPCAP00000010733	annotation not available	VPS35 retromer complex component.	0.691
ENSPCAP00000011121	IGF2R	ENSPCAP00000011121	ENSPCAP00000008636	annotation not available	Insulin like growth factor 2 receptor.	0.461
ENSPCAP00000011121	SNX1	ENSPCAP00000011121	ENSPCAP00000011302	annotation not available	Sorting nexin 1.	0.914
ENSPCAP00000011121	SNX2	ENSPCAP00000011121	ENSPCAP00000001868	annotation not available	Sorting nexin 2.	0.891
ENSPCAP00000011121	SNX32	ENSPCAP00000011121	ENSPCAP00000009822	annotation not available	Sorting nexin 32.	0.504
ENSPCAP00000011121	SNX5	ENSPCAP00000011121	ENSPCAP00000006713	annotation not available	Sorting nexin 5.	0.643
ENSPCAP00000011121	SNX6	ENSPCAP00000011121	ENSPCAP00000003560	annotation not available	Sorting nexin 6.	0.504
ENSPCAP00000011121	VPS26A	ENSPCAP00000011121	ENSPCAP00000010813	annotation not available	VPS26, retromer complex component A.	0.983
ENSPCAP00000011121	VPS29	ENSPCAP00000011121	ENSPCAP00000011203	annotation not available	VPS29 retromer complex component.	0.988
ENSPCAP00000011121	VPS35	ENSPCAP00000011121	ENSPCAP00000010733	annotation not available	VPS35 retromer complex component.	0.993
IGF2R	ENSPCAP00000000690	ENSPCAP00000008636	ENSPCAP00000000690	Insulin like growth factor 2 receptor.	annotation not available	0.983
IGF2R	ENSPCAP00000011121	ENSPCAP00000008636	ENSPCAP00000011121	Insulin like growth factor 2 receptor.	annotation not available	0.461
IGF2R	SNX1	ENSPCAP00000008636	ENSPCAP00000011302	Insulin like growth factor 2 receptor.	Sorting nexin 1.	0.784
IGF2R	SNX2	ENSPCAP00000008636	ENSPCAP00000001868	Insulin like growth factor 2 receptor.	Sorting nexin 2.	0.794
IGF2R	SNX32	ENSPCAP00000008636	ENSPCAP00000009822	Insulin like growth factor 2 receptor.	Sorting nexin 32.	0.656
IGF2R	SNX5	ENSPCAP00000008636	ENSPCAP00000006713	Insulin like growth factor 2 receptor.	Sorting nexin 5.	0.731