STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLGALT1Collagen beta(1-O)galactosyltransferase 1. (622 aa)    
Predicted Functional Partners:
ENSPCAP00000009778
annotation not available
   
 0.940
PLOD2
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2.
   
 0.931
PLOD1
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1.
   
 0.931
COLGALT2
Collagen beta(1-O)galactosyltransferase 2.
  
  
 
0.883
ENSPCAP00000007645
annotation not available
   
 0.636
OGFOD2
2-oxoglutarate and iron dependent oxygenase domain containing 2.
   
 0.632
COL23A1
Collagen type XXIII alpha 1 chain.
    
  0.628
COL2A1
Collagen type II alpha 1 chain.
    
  0.624
COL17A1
Collagen type XVII alpha 1 chain.
    
 0.597
COL4A6
Collagen type IV alpha 6 chain.
    
  0.586
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.