RPL3L protein (Procavia capensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RPL3L

Ribosomal protein L3 like. (405 aa)

Predicted Functional Partners:

ENSPCAP00000011047

0.998

ENSPCAP00000014229

0.998

RPL30

0.997

ENSPCAP00000002899

0.997

RPL8

0.997

RPL12

0.997

RPL10L

0.997

RPLP2

0.997

RPL27A

0.997

RPLP1

0.997

Your Current Organism:

Procavia capensis

NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPCAP00000002899	ENSPCAP00000011047	ENSPCAP00000002899	ENSPCAP00000011047	annotation not available	annotation not available	0.999
ENSPCAP00000002899	ENSPCAP00000014229	ENSPCAP00000002899	ENSPCAP00000014229	annotation not available	annotation not available	0.999
ENSPCAP00000002899	RPL10L	ENSPCAP00000002899	ENSPCAP00000009472	annotation not available	Ribosomal protein L10 like.	0.999
ENSPCAP00000002899	RPL12	ENSPCAP00000002899	ENSPCAP00000006967	annotation not available	Ribosomal protein L12.	0.999
ENSPCAP00000002899	RPL27A	ENSPCAP00000002899	ENSPCAP00000011030	annotation not available	Ribosomal protein L27a.	0.999
ENSPCAP00000002899	RPL30	ENSPCAP00000002899	ENSPCAP00000002305	annotation not available	Ribosomal protein L30.	0.999
ENSPCAP00000002899	RPL3L	ENSPCAP00000002899	ENSPCAP00000001885	annotation not available	Ribosomal protein L3 like.	0.997
ENSPCAP00000002899	RPL8	ENSPCAP00000002899	ENSPCAP00000006565	annotation not available	Ribosomal protein L8.	0.999
ENSPCAP00000002899	RPLP1	ENSPCAP00000002899	ENSPCAP00000013605	annotation not available	Ribosomal protein lateral stalk subunit P1.	0.999
ENSPCAP00000002899	RPLP2	ENSPCAP00000002899	ENSPCAP00000010531	annotation not available	Ribosomal protein lateral stalk subunit P2.	0.999
ENSPCAP00000011047	ENSPCAP00000002899	ENSPCAP00000011047	ENSPCAP00000002899	annotation not available	annotation not available	0.999
ENSPCAP00000011047	ENSPCAP00000014229	ENSPCAP00000011047	ENSPCAP00000014229	annotation not available	annotation not available	0.999
ENSPCAP00000011047	RPL10L	ENSPCAP00000011047	ENSPCAP00000009472	annotation not available	Ribosomal protein L10 like.	0.999
ENSPCAP00000011047	RPL12	ENSPCAP00000011047	ENSPCAP00000006967	annotation not available	Ribosomal protein L12.	0.999
ENSPCAP00000011047	RPL27A	ENSPCAP00000011047	ENSPCAP00000011030	annotation not available	Ribosomal protein L27a.	0.999
ENSPCAP00000011047	RPL30	ENSPCAP00000011047	ENSPCAP00000002305	annotation not available	Ribosomal protein L30.	0.999
ENSPCAP00000011047	RPL3L	ENSPCAP00000011047	ENSPCAP00000001885	annotation not available	Ribosomal protein L3 like.	0.998
ENSPCAP00000011047	RPL8	ENSPCAP00000011047	ENSPCAP00000006565	annotation not available	Ribosomal protein L8.	0.999
ENSPCAP00000011047	RPLP1	ENSPCAP00000011047	ENSPCAP00000013605	annotation not available	Ribosomal protein lateral stalk subunit P1.	0.999
ENSPCAP00000011047	RPLP2	ENSPCAP00000011047	ENSPCAP00000010531	annotation not available	Ribosomal protein lateral stalk subunit P2.	0.999