PUM1 protein (Procavia capensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

PUM1

Pumilio RNA binding family member 1. (1223 aa)

Predicted Functional Partners:

PUM2

0.986

NANOS1

0.942

COX17

0.876

ATXN1

0.876

CLINT1

0.863

RANBP2

0.861

MRPL19

0.858

SUPV3L1

0.852

MRPS5

0.847

COQ5

0.830

Your Current Organism:

Procavia capensis

NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATXN1	PUM1	ENSPCAP00000007673	ENSPCAP00000001890	Ataxin 1.	Pumilio RNA binding family member 1.	0.876
ATXN1	PUM2	ENSPCAP00000007673	ENSPCAP00000007519	Ataxin 1.	Pumilio RNA binding family member 2.	0.872
CLINT1	PUM1	ENSPCAP00000006391	ENSPCAP00000001890	Clathrin interactor 1.	Pumilio RNA binding family member 1.	0.863
CLINT1	PUM2	ENSPCAP00000006391	ENSPCAP00000007519	Clathrin interactor 1.	Pumilio RNA binding family member 2.	0.750
COQ5	PUM1	ENSPCAP00000004636	ENSPCAP00000001890	Coenzyme Q5, methyltransferase.	Pumilio RNA binding family member 1.	0.830
COQ5	PUM2	ENSPCAP00000004636	ENSPCAP00000007519	Coenzyme Q5, methyltransferase.	Pumilio RNA binding family member 2.	0.830
COX17	PUM1	ENSPCAP00000000753	ENSPCAP00000001890	Cytochrome c oxidase copper chaperone COX17.	Pumilio RNA binding family member 1.	0.876
COX17	PUM2	ENSPCAP00000000753	ENSPCAP00000007519	Cytochrome c oxidase copper chaperone COX17.	Pumilio RNA binding family member 2.	0.876
MRPL19	MRPS5	ENSPCAP00000001597	ENSPCAP00000011591	Mitochondrial ribosomal protein L19.	Mitochondrial ribosomal protein S5.	0.986
MRPL19	PUM1	ENSPCAP00000001597	ENSPCAP00000001890	Mitochondrial ribosomal protein L19.	Pumilio RNA binding family member 1.	0.858
MRPL19	PUM2	ENSPCAP00000001597	ENSPCAP00000007519	Mitochondrial ribosomal protein L19.	Pumilio RNA binding family member 2.	0.813
MRPL19	RANBP2	ENSPCAP00000001597	ENSPCAP00000001011	Mitochondrial ribosomal protein L19.	RAN binding protein 2.	0.462
MRPS5	MRPL19	ENSPCAP00000011591	ENSPCAP00000001597	Mitochondrial ribosomal protein S5.	Mitochondrial ribosomal protein L19.	0.986
MRPS5	PUM1	ENSPCAP00000011591	ENSPCAP00000001890	Mitochondrial ribosomal protein S5.	Pumilio RNA binding family member 1.	0.847
MRPS5	PUM2	ENSPCAP00000011591	ENSPCAP00000007519	Mitochondrial ribosomal protein S5.	Pumilio RNA binding family member 2.	0.802
NANOS1	PUM1	ENSPCAP00000006464	ENSPCAP00000001890	Nanos C2HC-type zinc finger 1.	Pumilio RNA binding family member 1.	0.942
NANOS1	PUM2	ENSPCAP00000006464	ENSPCAP00000007519	Nanos C2HC-type zinc finger 1.	Pumilio RNA binding family member 2.	0.984
PUM1	ATXN1	ENSPCAP00000001890	ENSPCAP00000007673	Pumilio RNA binding family member 1.	Ataxin 1.	0.876
PUM1	CLINT1	ENSPCAP00000001890	ENSPCAP00000006391	Pumilio RNA binding family member 1.	Clathrin interactor 1.	0.863
PUM1	COQ5	ENSPCAP00000001890	ENSPCAP00000004636	Pumilio RNA binding family member 1.	Coenzyme Q5, methyltransferase.	0.830