PUM1 protein (Procavia capensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PUM1

Pumilio RNA binding family member 1. (1223 aa)

Predicted Functional Partners:

ENSPCAP00000000690

0.979

NANOS1

0.939

ATXN1

0.887

PUM2

0.882

ENSPCAP00000004712

0.865

ENSPCAP00000014866

0.827

COX17

0.798

CLINT1

0.774

CNOT8

0.752

ENSPCAP00000013223

0.745

Your Current Organism:

Procavia capensis

NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATXN1	PUM1	ENSPCAP00000007673	ENSPCAP00000001890	Ataxin 1.	Pumilio RNA binding family member 1.	0.887
ATXN1	PUM2	ENSPCAP00000007673	ENSPCAP00000007519	Ataxin 1.	Pumilio RNA binding family member 2.	0.789
CLINT1	ENSPCAP00000000690	ENSPCAP00000006391	ENSPCAP00000000690	Clathrin interactor 1.	annotation not available	0.997
CLINT1	PUM1	ENSPCAP00000006391	ENSPCAP00000001890	Clathrin interactor 1.	Pumilio RNA binding family member 1.	0.774
CLINT1	PUM2	ENSPCAP00000006391	ENSPCAP00000007519	Clathrin interactor 1.	Pumilio RNA binding family member 2.	0.721
CNOT8	ENSPCAP00000004712	ENSPCAP00000002630	ENSPCAP00000004712	CCR4-NOT transcription complex subunit 8.	annotation not available	0.639
CNOT8	ENSPCAP00000014866	ENSPCAP00000002630	ENSPCAP00000014866	CCR4-NOT transcription complex subunit 8.	annotation not available	0.942
CNOT8	NANOS1	ENSPCAP00000002630	ENSPCAP00000006464	CCR4-NOT transcription complex subunit 8.	Nanos C2HC-type zinc finger 1.	0.460
CNOT8	PUM1	ENSPCAP00000002630	ENSPCAP00000001890	CCR4-NOT transcription complex subunit 8.	Pumilio RNA binding family member 1.	0.752
CNOT8	PUM2	ENSPCAP00000002630	ENSPCAP00000007519	CCR4-NOT transcription complex subunit 8.	Pumilio RNA binding family member 2.	0.752
COX17	PUM1	ENSPCAP00000000753	ENSPCAP00000001890	Cytochrome c oxidase copper chaperone COX17.	Pumilio RNA binding family member 1.	0.798
COX17	PUM2	ENSPCAP00000000753	ENSPCAP00000007519	Cytochrome c oxidase copper chaperone COX17.	Pumilio RNA binding family member 2.	0.798
ENSPCAP00000000690	CLINT1	ENSPCAP00000000690	ENSPCAP00000006391	annotation not available	Clathrin interactor 1.	0.997
ENSPCAP00000000690	PUM1	ENSPCAP00000000690	ENSPCAP00000001890	annotation not available	Pumilio RNA binding family member 1.	0.979
ENSPCAP00000000690	PUM2	ENSPCAP00000000690	ENSPCAP00000007519	annotation not available	Pumilio RNA binding family member 2.	0.979
ENSPCAP00000004712	CNOT8	ENSPCAP00000004712	ENSPCAP00000002630	annotation not available	CCR4-NOT transcription complex subunit 8.	0.639
ENSPCAP00000004712	ENSPCAP00000014866	ENSPCAP00000004712	ENSPCAP00000014866	annotation not available	annotation not available	0.722
ENSPCAP00000004712	PUM1	ENSPCAP00000004712	ENSPCAP00000001890	annotation not available	Pumilio RNA binding family member 1.	0.865
ENSPCAP00000004712	PUM2	ENSPCAP00000004712	ENSPCAP00000007519	annotation not available	Pumilio RNA binding family member 2.	0.865
ENSPCAP00000013223	PUM1	ENSPCAP00000013223	ENSPCAP00000001890	annotation not available	Pumilio RNA binding family member 1.	0.745