STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SERGEFSecretion regulating guanine nucleotide exchange factor. (349 aa)    
Predicted Functional Partners:
DPH3
Diphthamide biosynthesis 3.
    
 
 0.987
CCDC115
Coiled-coil domain containing 115.
      
 0.896
ENSPCAP00000015222
annotation not available
      
 0.888
EXOC2
Exocyst complex component 2.
    
 
 0.878
ATP6V1C1
ATPase H+ transporting V1 subunit C1.
      
 0.856
HEATR9
HEAT repeat containing 9.
      
 0.784
RANBP2
RAN binding protein 2.
   
 0.736
ATP6V1H
ATPase H+ transporting V1 subunit H.
      
 0.692
USH1C
USH1 protein network component harmonin.
    
 
 0.617
NDUFV2
NADH:ubiquinone oxidoreductase core subunit V2.
   
 
 0.617
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.