ENSPCAP00000001904 protein (Procavia capensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSPCAP00000001904

annotation not available (265 aa)

Predicted Functional Partners:

TSC22D1

0.945

LYSMD2

0.912

REM2

0.912

ENSPCAP00000003096

0.902

PSMG1

0.886

ENSPCAP00000013887

0.885

ENSPCAP00000014921

0.872

CCAR1

0.790

PSMG4

0.774

NSUN4

0.740

Your Current Organism:

Procavia capensis

NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCAR1	ENSPCAP00000001904	ENSPCAP00000009451	ENSPCAP00000001904	Cell division cycle and apoptosis regulator 1.	annotation not available	0.790
ENSPCAP00000001904	CCAR1	ENSPCAP00000001904	ENSPCAP00000009451	annotation not available	Cell division cycle and apoptosis regulator 1.	0.790
ENSPCAP00000001904	ENSPCAP00000003096	ENSPCAP00000001904	ENSPCAP00000003096	annotation not available	annotation not available	0.902
ENSPCAP00000001904	ENSPCAP00000013887	ENSPCAP00000001904	ENSPCAP00000013887	annotation not available	annotation not available	0.885
ENSPCAP00000001904	ENSPCAP00000014921	ENSPCAP00000001904	ENSPCAP00000014921	annotation not available	annotation not available	0.872
ENSPCAP00000001904	LYSMD2	ENSPCAP00000001904	ENSPCAP00000004293	annotation not available	LysM domain containing 2.	0.912
ENSPCAP00000001904	NSUN4	ENSPCAP00000001904	ENSPCAP00000015815	annotation not available	NOP2/Sun RNA methyltransferase 4.	0.740
ENSPCAP00000001904	PSMG1	ENSPCAP00000001904	ENSPCAP00000005359	annotation not available	Proteasome assembly chaperone 1.	0.886
ENSPCAP00000001904	PSMG4	ENSPCAP00000001904	ENSPCAP00000007428	annotation not available	Proteasome assembly chaperone 4.	0.774
ENSPCAP00000001904	REM2	ENSPCAP00000001904	ENSPCAP00000006164	annotation not available	RRAD and GEM like GTPase 2.	0.912
ENSPCAP00000001904	TSC22D1	ENSPCAP00000001904	ENSPCAP00000000708	annotation not available	TSC22 domain family member 1.	0.945
ENSPCAP00000003096	ENSPCAP00000001904	ENSPCAP00000003096	ENSPCAP00000001904	annotation not available	annotation not available	0.902
ENSPCAP00000003096	PSMG1	ENSPCAP00000003096	ENSPCAP00000005359	annotation not available	Proteasome assembly chaperone 1.	0.998
ENSPCAP00000003096	PSMG4	ENSPCAP00000003096	ENSPCAP00000007428	annotation not available	Proteasome assembly chaperone 4.	0.991
ENSPCAP00000013887	ENSPCAP00000001904	ENSPCAP00000013887	ENSPCAP00000001904	annotation not available	annotation not available	0.885
ENSPCAP00000013887	TSC22D1	ENSPCAP00000013887	ENSPCAP00000000708	annotation not available	TSC22 domain family member 1.	0.711
ENSPCAP00000014921	ENSPCAP00000001904	ENSPCAP00000014921	ENSPCAP00000001904	annotation not available	annotation not available	0.872
ENSPCAP00000014921	REM2	ENSPCAP00000014921	ENSPCAP00000006164	annotation not available	RRAD and GEM like GTPase 2.	0.561
LYSMD2	ENSPCAP00000001904	ENSPCAP00000004293	ENSPCAP00000001904	LysM domain containing 2.	annotation not available	0.912
NSUN4	ENSPCAP00000001904	ENSPCAP00000015815	ENSPCAP00000001904	NOP2/Sun RNA methyltransferase 4.	annotation not available	0.740