ARID5B protein (Procavia capensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ARID5B

AT-rich interaction domain 5B. (1187 aa)

Predicted Functional Partners:

PHF2

0.853

HDAC1

0.721

HDAC2

0.721

ENSPCAP00000004559

0.705

PBRM1

0.702

SAP30

0.684

ENSPCAP00000012058

0.684

C16orf87

0.682

ENSPCAP00000007294

0.676

HDAC3

0.662

Your Current Organism:

Procavia capensis

NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARID5B	C16orf87	ENSPCAP00000001926	ENSPCAP00000010931	AT-rich interaction domain 5B.	Chromosome 16 open reading frame 87.	0.682
ARID5B	ENSPCAP00000004559	ENSPCAP00000001926	ENSPCAP00000004559	AT-rich interaction domain 5B.	annotation not available	0.705
ARID5B	ENSPCAP00000007294	ENSPCAP00000001926	ENSPCAP00000007294	AT-rich interaction domain 5B.	annotation not available	0.676
ARID5B	ENSPCAP00000012058	ENSPCAP00000001926	ENSPCAP00000012058	AT-rich interaction domain 5B.	annotation not available	0.684
ARID5B	HDAC1	ENSPCAP00000001926	ENSPCAP00000005589	AT-rich interaction domain 5B.	Histone deacetylase 1.	0.721
ARID5B	HDAC2	ENSPCAP00000001926	ENSPCAP00000007999	AT-rich interaction domain 5B.	Histone deacetylase 2.	0.721
ARID5B	HDAC3	ENSPCAP00000001926	ENSPCAP00000010084	AT-rich interaction domain 5B.	Histone deacetylase 3.	0.662
ARID5B	PBRM1	ENSPCAP00000001926	ENSPCAP00000001837	AT-rich interaction domain 5B.	Polybromo 1.	0.702
ARID5B	PHF2	ENSPCAP00000001926	ENSPCAP00000006754	AT-rich interaction domain 5B.	PHD finger protein 2.	0.853
ARID5B	SAP30	ENSPCAP00000001926	ENSPCAP00000010948	AT-rich interaction domain 5B.	Sin3A associated protein 30.	0.684
C16orf87	ARID5B	ENSPCAP00000010931	ENSPCAP00000001926	Chromosome 16 open reading frame 87.	AT-rich interaction domain 5B.	0.682
ENSPCAP00000004559	ARID5B	ENSPCAP00000004559	ENSPCAP00000001926	annotation not available	AT-rich interaction domain 5B.	0.705
ENSPCAP00000004559	ENSPCAP00000007294	ENSPCAP00000004559	ENSPCAP00000007294	annotation not available	annotation not available	0.564
ENSPCAP00000004559	HDAC1	ENSPCAP00000004559	ENSPCAP00000005589	annotation not available	Histone deacetylase 1.	0.584
ENSPCAP00000004559	HDAC2	ENSPCAP00000004559	ENSPCAP00000007999	annotation not available	Histone deacetylase 2.	0.584
ENSPCAP00000004559	HDAC3	ENSPCAP00000004559	ENSPCAP00000010084	annotation not available	Histone deacetylase 3.	0.564
ENSPCAP00000004559	PBRM1	ENSPCAP00000004559	ENSPCAP00000001837	annotation not available	Polybromo 1.	0.992
ENSPCAP00000007294	ARID5B	ENSPCAP00000007294	ENSPCAP00000001926	annotation not available	AT-rich interaction domain 5B.	0.676
ENSPCAP00000007294	ENSPCAP00000004559	ENSPCAP00000007294	ENSPCAP00000004559	annotation not available	annotation not available	0.564
ENSPCAP00000007294	ENSPCAP00000012058	ENSPCAP00000007294	ENSPCAP00000012058	annotation not available	annotation not available	0.810