ENSPCAP00000001942 protein (Procavia capensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSPCAP00000001942

annotation not available (97 aa)

Predicted Functional Partners:

MYSM1

0.852

ENSPCAP00000014601

0.791

ENSPCAP00000016064

0.791

H2BC18

0.710

H2BC1

0.709

H2BC5

0.706

ENSPCAP00000013276

0.706

ENSPCAP00000004942

0.705

H2BC21

0.705

ENSPCAP00000008497

0.705

Your Current Organism:

Procavia capensis

NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax

Export your current network:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPCAP00000001942	ENSPCAP00000004942	ENSPCAP00000001942	ENSPCAP00000004942	annotation not available	annotation not available	0.705
ENSPCAP00000001942	ENSPCAP00000008497	ENSPCAP00000001942	ENSPCAP00000008497	annotation not available	annotation not available	0.705
ENSPCAP00000001942	ENSPCAP00000013276	ENSPCAP00000001942	ENSPCAP00000013276	annotation not available	annotation not available	0.706
ENSPCAP00000001942	ENSPCAP00000014601	ENSPCAP00000001942	ENSPCAP00000014601	annotation not available	annotation not available	0.791
ENSPCAP00000001942	ENSPCAP00000016064	ENSPCAP00000001942	ENSPCAP00000016064	annotation not available	annotation not available	0.791
ENSPCAP00000001942	H2BC1	ENSPCAP00000001942	ENSPCAP00000000600	annotation not available	H2B clustered histone 1.	0.709
ENSPCAP00000001942	H2BC18	ENSPCAP00000001942	ENSPCAP00000003039	annotation not available	H2B clustered histone 18.	0.710
ENSPCAP00000001942	H2BC21	ENSPCAP00000001942	ENSPCAP00000006680	annotation not available	H2B clustered histone 21.	0.705
ENSPCAP00000001942	H2BC5	ENSPCAP00000001942	ENSPCAP00000013065	annotation not available	H2B clustered histone 5.	0.706
ENSPCAP00000001942	MYSM1	ENSPCAP00000001942	ENSPCAP00000012781	annotation not available	Myb like, SWIRM and MPN domains 1.	0.852
ENSPCAP00000004942	ENSPCAP00000001942	ENSPCAP00000004942	ENSPCAP00000001942	annotation not available	annotation not available	0.705
ENSPCAP00000004942	ENSPCAP00000008497	ENSPCAP00000004942	ENSPCAP00000008497	annotation not available	annotation not available	0.864
ENSPCAP00000004942	ENSPCAP00000013276	ENSPCAP00000004942	ENSPCAP00000013276	annotation not available	annotation not available	0.799
ENSPCAP00000004942	ENSPCAP00000014601	ENSPCAP00000004942	ENSPCAP00000014601	annotation not available	annotation not available	0.750
ENSPCAP00000004942	ENSPCAP00000016064	ENSPCAP00000004942	ENSPCAP00000016064	annotation not available	annotation not available	0.906
ENSPCAP00000004942	H2BC21	ENSPCAP00000004942	ENSPCAP00000006680	annotation not available	H2B clustered histone 21.	0.790
ENSPCAP00000004942	H2BC5	ENSPCAP00000004942	ENSPCAP00000013065	annotation not available	H2B clustered histone 5.	0.864
ENSPCAP00000004942	MYSM1	ENSPCAP00000004942	ENSPCAP00000012781	annotation not available	Myb like, SWIRM and MPN domains 1.	0.463
ENSPCAP00000008497	ENSPCAP00000001942	ENSPCAP00000008497	ENSPCAP00000001942	annotation not available	annotation not available	0.705
ENSPCAP00000008497	ENSPCAP00000004942	ENSPCAP00000008497	ENSPCAP00000004942	annotation not available	annotation not available	0.864