STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TSEN54tRNA splicing endonuclease subunit 54. (501 aa)    
Predicted Functional Partners:
TSEN2
tRNA splicing endonuclease subunit 2.
    
 0.983
TSEN15
tRNA splicing endonuclease subunit 15.
    
 0.934
TSEN34
tRNA splicing endonuclease subunit 34.
   
 0.901
CLP1
Cleavage and polyadenylation factor I subunit 1.
    
 0.877
TRMT2B
tRNA methyltransferase 2 homolog B.
   
    0.695
TRMT2A
tRNA methyltransferase 2 homolog A.
   
    0.695
CPSF1
Cleavage and polyadenylation specific factor 1.
     
 0.643
RARS2
arginyl-tRNA synthetase 2, mitochondrial.
      
 0.586
TRPT1
tRNA phosphotransferase 1.
      
 0.574
CPSF4
Cleavage and polyadenylation specific factor 4.
   
 
  0.545
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.