Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PDGFDPlatelet derived growth factor D. (369 aa)    
Predicted Functional Partners:
VEGFC
Vascular endothelial growth factor C.
     
 0.956
ENSPCAP00000007336
annotation not available
    
 
 0.955
DCTN6
Dynactin subunit 6.
    
   0.954
DCTN5
Dynactin subunit 5.
    
   0.954
PDGFRB
Platelet derived growth factor receptor beta.
    
 0.948
PDGFB
Platelet derived growth factor subunit B.
     
 0.948
PDGFRA
Platelet derived growth factor receptor alpha.
    
 0.944
VEGFD
Vascular endothelial growth factor D.
     
 0.939
PDGFA
Platelet derived growth factor subunit A.
     
 0.939
DCTN4
Dynactin subunit 4.
    
   0.938
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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