Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PGK1Phosphoglycerate kinase 1. (417 aa)    
Predicted Functional Partners:
TPI1
Triosephosphate isomerase 1.
 
 0.999
GAPDH
Glyceraldehyde-3-phosphate dehydrogenase.
  
 0.998
GAPDHS
Glyceraldehyde-3-phosphate dehydrogenase, spermatogenic.
  
 0.985
BPGM
Bisphosphoglycerate mutase.
   
 0.981
ENSPCAP00000015757
annotation not available
  
 0.977
PGAM2
Phosphoglycerate mutase 2.
   
 0.974
PGAM4
Phosphoglycerate mutase family member 4.
   
 0.969
PGAM1
Phosphoglycerate mutase 1.
   
 0.969
ENO3
Enolase 3.
  
 0.954
ENO1
Enolase 1.
  
 0.954
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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