STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CDK5RAP3CDK5 regulatory subunit associated protein 3. (505 aa)    
Predicted Functional Partners:
UFL1
UFM1 specific ligase 1.
   
 
 0.996
UFC1
Ubiquitin-fold modifier conjugating enzyme 1.
   
 
 0.973
LTN1
Listerin E3 ubiquitin protein ligase 1.
    
 
 0.835
ENSPCAP00000013703
annotation not available
    
   0.821
SRPRB
SRP receptor subunit beta.
    
 
 0.790
RPL26L1
Ribosomal protein L26 like 1.
   
 
 0.739
ENSPCAP00000015803
annotation not available
    
 
 0.736
RPL11
Ribosomal protein L11.
   
   0.731
MDM2
MDM2 proto-oncogene.
    
 
 0.728
HSPA4
Heat shock protein family A (Hsp70) member 4.
    
   0.727
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.