Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSRP1Structure specific recognition protein 1. (698 aa)    
Predicted Functional Partners:
SUPT16H
SPT16 homolog, facilitates chromatin remodeling subunit.
   
 0.999
MMS22L
MMS22 like, DNA repair protein.
    
 0.996
ENSPCAP00000007162
annotation not available
   
 0.994
ENSPCAP00000004346
annotation not available
   
 0.987
SUPT6H
SPT6 homolog, histone chaperone and transcription elongation factor.
   
 0.985
PAF1
PAF1 homolog, Paf1/RNA polymerase II complex component.
   
 0.984
SUPT5H
SPT5 homolog, DSIF elongation factor subunit.
   
 0.983
RTF1
RTF1 homolog, Paf1/RNA polymerase II complex component.
   
 0.980
IWS1
Interacts with SUPT6H, CTD assembly factor 1.
   
 0.979
CDC73
Cell division cycle 73.
   
 0.978
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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