Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PHF3PHD finger protein 3. (2042 aa)    
Predicted Functional Partners:
NIPBL
NIPBL cohesin loading factor.
   
 
 0.968
ENSPCAP00000006560
annotation not available
   
 0.924
BPTF
Bromodomain PHD finger transcription factor.
   
 
  0.920
SETD2
SET domain containing 2, histone lysine methyltransferase.
   
 
 0.893
SUPT5H
SPT5 homolog, DSIF elongation factor subunit.
    
  0.873
POLR2E
RNA polymerase II subunit E.
    
  0.857
PIN1
Peptidylprolyl cis/trans isomerase, NIMA-interacting 1.
    
 
 0.849
KMT2E
Lysine methyltransferase 2E.
  
 0.829
USP34
Ubiquitin specific peptidase 34.
   
 
  0.817
SCAF11
SR-related CTD associated factor 11.
   
  
 0.788
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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