Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KDM3ALysine demethylase 3A. (1247 aa)    
Predicted Functional Partners:
KDM3B
Lysine demethylase 3B.
   
  0.973
SYMPK
Symplekin.
   
   0.927
PPARG
Peroxisome proliferator activated receptor gamma.
    
 0.913
ENSPCAP00000004559
annotation not available
    
 0.880
KDM5A
Lysine demethylase 5A.
    
 
 0.879
PRKACB
Protein kinase cAMP-activated catalytic subunit beta.
   
 
 0.878
SMARCC1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1.
   
 
 0.871
ARID1A
AT-rich interaction domain 1A.
   
 0.868
ARID1B
AT-rich interaction domain 1B.
   
 0.868
PRKACA
Protein kinase cAMP-activated catalytic subunit alpha.
   
 
 0.866
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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