PRPF4 protein (Procavia capensis) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

PRPF4

pre-mRNA processing factor 4. (514 aa)

Predicted Functional Partners:

PRPF3

0.999

PPIH

0.996

PRPF31

0.996

PRPF6

0.995

SNRNP200

0.993

SART1

0.992

PRPF8

0.991

ENSPCAP00000010294

0.991

ENSPCAP00000000975

0.990

EFTUD2

0.982

Your Current Organism:

Procavia capensis

NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EFTUD2	ENSPCAP00000000975	ENSPCAP00000000824	ENSPCAP00000000975	Elongation factor Tu GTP binding domain containing 2.	annotation not available	0.991
EFTUD2	ENSPCAP00000010294	ENSPCAP00000000824	ENSPCAP00000010294	Elongation factor Tu GTP binding domain containing 2.	annotation not available	0.957
EFTUD2	PPIH	ENSPCAP00000000824	ENSPCAP00000010375	Elongation factor Tu GTP binding domain containing 2.	Peptidylprolyl isomerase H.	0.930
EFTUD2	PRPF3	ENSPCAP00000000824	ENSPCAP00000013935	Elongation factor Tu GTP binding domain containing 2.	pre-mRNA processing factor 3.	0.986
EFTUD2	PRPF31	ENSPCAP00000000824	ENSPCAP00000011113	Elongation factor Tu GTP binding domain containing 2.	pre-mRNA processing factor 31.	0.988
EFTUD2	PRPF4	ENSPCAP00000000824	ENSPCAP00000002407	Elongation factor Tu GTP binding domain containing 2.	pre-mRNA processing factor 4.	0.982
EFTUD2	PRPF6	ENSPCAP00000000824	ENSPCAP00000006141	Elongation factor Tu GTP binding domain containing 2.	pre-mRNA processing factor 6.	0.999
EFTUD2	PRPF8	ENSPCAP00000000824	ENSPCAP00000008490	Elongation factor Tu GTP binding domain containing 2.	pre-mRNA processing factor 8.	0.999
EFTUD2	SART1	ENSPCAP00000000824	ENSPCAP00000010571	Elongation factor Tu GTP binding domain containing 2.	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	0.994
EFTUD2	SNRNP200	ENSPCAP00000000824	ENSPCAP00000008123	Elongation factor Tu GTP binding domain containing 2.	Small nuclear ribonucleoprotein U5 subunit 200.	0.999
ENSPCAP00000000975	EFTUD2	ENSPCAP00000000975	ENSPCAP00000000824	annotation not available	Elongation factor Tu GTP binding domain containing 2.	0.991
ENSPCAP00000000975	ENSPCAP00000010294	ENSPCAP00000000975	ENSPCAP00000010294	annotation not available	annotation not available	0.998
ENSPCAP00000000975	PPIH	ENSPCAP00000000975	ENSPCAP00000010375	annotation not available	Peptidylprolyl isomerase H.	0.838
ENSPCAP00000000975	PRPF3	ENSPCAP00000000975	ENSPCAP00000013935	annotation not available	pre-mRNA processing factor 3.	0.993
ENSPCAP00000000975	PRPF31	ENSPCAP00000000975	ENSPCAP00000011113	annotation not available	pre-mRNA processing factor 31.	0.993
ENSPCAP00000000975	PRPF4	ENSPCAP00000000975	ENSPCAP00000002407	annotation not available	pre-mRNA processing factor 4.	0.990
ENSPCAP00000000975	PRPF6	ENSPCAP00000000975	ENSPCAP00000006141	annotation not available	pre-mRNA processing factor 6.	0.989
ENSPCAP00000000975	PRPF8	ENSPCAP00000000975	ENSPCAP00000008490	annotation not available	pre-mRNA processing factor 8.	0.989
ENSPCAP00000000975	SART1	ENSPCAP00000000975	ENSPCAP00000010571	annotation not available	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	0.987
ENSPCAP00000000975	SNRNP200	ENSPCAP00000000975	ENSPCAP00000008123	annotation not available	Small nuclear ribonucleoprotein U5 subunit 200.	0.987