Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CHMCHM Rab escort protein. (638 aa)    
Predicted Functional Partners:
RABGGTB
Rab geranylgeranyltransferase subunit beta.
    
 0.994
RAB31
RAB31, member RAS oncogene family.
    
 0.958
RAB35
RAB35, member RAS oncogene family.
    
 0.919
RAB30
RAB30, member RAS oncogene family.
    
 0.918
RAB12
RAB12, member RAS oncogene family.
    
 0.915
RAB1A
RAB1A, member RAS oncogene family.
    
 0.905
RAB1B
RAB1B, member RAS oncogene family.
    
 0.905
RAB10
RAB10, member RAS oncogene family.
    
 0.902
RAB32
RAB32, member RAS oncogene family.
    
 0.890
RAB27B
RAB27B, member RAS oncogene family.
    
 0.871
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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