FAM49B protein (Procavia capensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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Co-occurrence

Co-expression

Experiments

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[Homology]

Score

FAM49B

Family with sequence similarity 49 member B. (303 aa)

Predicted Functional Partners:

FAM49A

0.998

RAC1

0.916

ENSPCAP00000002179

0.916

RAC3

0.916

KLHL7

0.681

RHOG

0.659

RHOV

0.644

ENSPCAP00000010648

0.644

ENSPCAP00000015967

0.616

TASP1

0.615

Your Current Organism:

Procavia capensis

NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPCAP00000002179	ENSPCAP00000010648	ENSPCAP00000002179	ENSPCAP00000010648	annotation not available	annotation not available	0.955
ENSPCAP00000002179	FAM49A	ENSPCAP00000002179	ENSPCAP00000014151	annotation not available	Family with sequence similarity 49 member A.	0.894
ENSPCAP00000002179	FAM49B	ENSPCAP00000002179	ENSPCAP00000002691	annotation not available	Family with sequence similarity 49 member B.	0.916
ENSPCAP00000002179	RHOG	ENSPCAP00000002179	ENSPCAP00000013633	annotation not available	Ras homolog family member G.	0.834
ENSPCAP00000010648	ENSPCAP00000002179	ENSPCAP00000010648	ENSPCAP00000002179	annotation not available	annotation not available	0.955
ENSPCAP00000010648	FAM49A	ENSPCAP00000010648	ENSPCAP00000014151	annotation not available	Family with sequence similarity 49 member A.	0.644
ENSPCAP00000010648	FAM49B	ENSPCAP00000010648	ENSPCAP00000002691	annotation not available	Family with sequence similarity 49 member B.	0.644
ENSPCAP00000010648	RAC1	ENSPCAP00000010648	ENSPCAP00000000488	annotation not available	Rac family small GTPase 1.	0.955
ENSPCAP00000010648	RAC3	ENSPCAP00000010648	ENSPCAP00000009242	annotation not available	Rac family small GTPase 3.	0.955
ENSPCAP00000010648	RHOG	ENSPCAP00000010648	ENSPCAP00000013633	annotation not available	Ras homolog family member G.	0.747
ENSPCAP00000010648	RHOV	ENSPCAP00000010648	ENSPCAP00000007886	annotation not available	Ras homolog family member V.	0.654
ENSPCAP00000015967	FAM49B	ENSPCAP00000015967	ENSPCAP00000002691	annotation not available	Family with sequence similarity 49 member B.	0.616
FAM49A	ENSPCAP00000002179	ENSPCAP00000014151	ENSPCAP00000002179	Family with sequence similarity 49 member A.	annotation not available	0.894
FAM49A	ENSPCAP00000010648	ENSPCAP00000014151	ENSPCAP00000010648	Family with sequence similarity 49 member A.	annotation not available	0.644
FAM49A	FAM49B	ENSPCAP00000014151	ENSPCAP00000002691	Family with sequence similarity 49 member A.	Family with sequence similarity 49 member B.	0.998
FAM49A	KLHL7	ENSPCAP00000014151	ENSPCAP00000010149	Family with sequence similarity 49 member A.	Kelch like family member 7.	0.563
FAM49A	RAC1	ENSPCAP00000014151	ENSPCAP00000000488	Family with sequence similarity 49 member A.	Rac family small GTPase 1.	0.894
FAM49A	RAC3	ENSPCAP00000014151	ENSPCAP00000009242	Family with sequence similarity 49 member A.	Rac family small GTPase 3.	0.894
FAM49A	RHOG	ENSPCAP00000014151	ENSPCAP00000013633	Family with sequence similarity 49 member A.	Ras homolog family member G.	0.651
FAM49A	RHOV	ENSPCAP00000014151	ENSPCAP00000007886	Family with sequence similarity 49 member A.	Ras homolog family member V.	0.644