RPS3 protein (Procavia capensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

RPS3

Ribosomal protein S3. (243 aa)

Predicted Functional Partners:

RPL4

0.999

RACK1

0.999

RPS4X

0.999

ENSPCAP00000001939

0.999

RPL26L1

0.999

RPL30

0.999

ENSPCAP00000002368

0.999

ENSPCAP00000002665

0.999

ENSPCAP00000002733

0.999

ENSPCAP00000002734

0.999

Your Current Organism:

Procavia capensis

NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPCAP00000001939	ENSPCAP00000002368	ENSPCAP00000001939	ENSPCAP00000002368	annotation not available	annotation not available	0.999
ENSPCAP00000001939	ENSPCAP00000002665	ENSPCAP00000001939	ENSPCAP00000002665	annotation not available	annotation not available	0.999
ENSPCAP00000001939	ENSPCAP00000002733	ENSPCAP00000001939	ENSPCAP00000002733	annotation not available	annotation not available	0.999
ENSPCAP00000001939	ENSPCAP00000002734	ENSPCAP00000001939	ENSPCAP00000002734	annotation not available	annotation not available	0.999
ENSPCAP00000001939	RACK1	ENSPCAP00000001939	ENSPCAP00000000642	annotation not available	Receptor for activated C kinase 1.	0.999
ENSPCAP00000001939	RPL26L1	ENSPCAP00000001939	ENSPCAP00000002071	annotation not available	Ribosomal protein L26 like 1.	0.999
ENSPCAP00000001939	RPL30	ENSPCAP00000001939	ENSPCAP00000002305	annotation not available	Ribosomal protein L30.	0.999
ENSPCAP00000001939	RPL4	ENSPCAP00000001939	ENSPCAP00000000586	annotation not available	Ribosomal protein L4.	0.999
ENSPCAP00000001939	RPS3	ENSPCAP00000001939	ENSPCAP00000002830	annotation not available	Ribosomal protein S3.	0.999
ENSPCAP00000001939	RPS4X	ENSPCAP00000001939	ENSPCAP00000000685	annotation not available	Ribosomal protein S4 X-linked.	0.999
ENSPCAP00000002368	ENSPCAP00000001939	ENSPCAP00000002368	ENSPCAP00000001939	annotation not available	annotation not available	0.999
ENSPCAP00000002368	ENSPCAP00000002665	ENSPCAP00000002368	ENSPCAP00000002665	annotation not available	annotation not available	0.999
ENSPCAP00000002368	ENSPCAP00000002733	ENSPCAP00000002368	ENSPCAP00000002733	annotation not available	annotation not available	0.999
ENSPCAP00000002368	ENSPCAP00000002734	ENSPCAP00000002368	ENSPCAP00000002734	annotation not available	annotation not available	0.999
ENSPCAP00000002368	RACK1	ENSPCAP00000002368	ENSPCAP00000000642	annotation not available	Receptor for activated C kinase 1.	0.999
ENSPCAP00000002368	RPL26L1	ENSPCAP00000002368	ENSPCAP00000002071	annotation not available	Ribosomal protein L26 like 1.	0.999
ENSPCAP00000002368	RPL30	ENSPCAP00000002368	ENSPCAP00000002305	annotation not available	Ribosomal protein L30.	0.999
ENSPCAP00000002368	RPL4	ENSPCAP00000002368	ENSPCAP00000000586	annotation not available	Ribosomal protein L4.	0.999
ENSPCAP00000002368	RPS3	ENSPCAP00000002368	ENSPCAP00000002830	annotation not available	Ribosomal protein S3.	0.999
ENSPCAP00000002368	RPS4X	ENSPCAP00000002368	ENSPCAP00000000685	annotation not available	Ribosomal protein S4 X-linked.	0.999