ERAL1 protein (Procavia capensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ERAL1

Era like 12S mitochondrial rRNA chaperone 1. (435 aa)

Predicted Functional Partners:

MRPS27

0.996

MRPS7

0.996

DAP3

0.995

MRPS22

0.992

MRPS26

0.991

MRPS9

0.985

MRPS12

0.985

MRPS6

0.984

MRPS14

0.983

MRPS10

0.983

Your Current Organism:

Procavia capensis

NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DAP3	ERAL1	ENSPCAP00000007151	ENSPCAP00000002833	Death associated protein 3.	Era like 12S mitochondrial rRNA chaperone 1.	0.995
DAP3	MRPS10	ENSPCAP00000007151	ENSPCAP00000003782	Death associated protein 3.	Mitochondrial ribosomal protein S10.	0.999
DAP3	MRPS12	ENSPCAP00000007151	ENSPCAP00000010061	Death associated protein 3.	Mitochondrial ribosomal protein S12.	0.997
DAP3	MRPS14	ENSPCAP00000007151	ENSPCAP00000003499	Death associated protein 3.	Mitochondrial ribosomal protein S14.	0.994
DAP3	MRPS22	ENSPCAP00000007151	ENSPCAP00000015666	Death associated protein 3.	Mitochondrial ribosomal protein S22.	0.999
DAP3	MRPS26	ENSPCAP00000007151	ENSPCAP00000008252	Death associated protein 3.	Mitochondrial ribosomal protein S26.	0.997
DAP3	MRPS27	ENSPCAP00000007151	ENSPCAP00000006298	Death associated protein 3.	Mitochondrial ribosomal protein S27.	0.999
DAP3	MRPS6	ENSPCAP00000007151	ENSPCAP00000002132	Death associated protein 3.	Mitochondrial ribosomal protein S6.	0.996
DAP3	MRPS7	ENSPCAP00000007151	ENSPCAP00000014879	Death associated protein 3.	Mitochondrial ribosomal protein S7.	0.998
DAP3	MRPS9	ENSPCAP00000007151	ENSPCAP00000008242	Death associated protein 3.	Mitochondrial ribosomal protein S9.	0.999
ERAL1	DAP3	ENSPCAP00000002833	ENSPCAP00000007151	Era like 12S mitochondrial rRNA chaperone 1.	Death associated protein 3.	0.995
ERAL1	MRPS10	ENSPCAP00000002833	ENSPCAP00000003782	Era like 12S mitochondrial rRNA chaperone 1.	Mitochondrial ribosomal protein S10.	0.983
ERAL1	MRPS12	ENSPCAP00000002833	ENSPCAP00000010061	Era like 12S mitochondrial rRNA chaperone 1.	Mitochondrial ribosomal protein S12.	0.985
ERAL1	MRPS14	ENSPCAP00000002833	ENSPCAP00000003499	Era like 12S mitochondrial rRNA chaperone 1.	Mitochondrial ribosomal protein S14.	0.983
ERAL1	MRPS22	ENSPCAP00000002833	ENSPCAP00000015666	Era like 12S mitochondrial rRNA chaperone 1.	Mitochondrial ribosomal protein S22.	0.992
ERAL1	MRPS26	ENSPCAP00000002833	ENSPCAP00000008252	Era like 12S mitochondrial rRNA chaperone 1.	Mitochondrial ribosomal protein S26.	0.991
ERAL1	MRPS27	ENSPCAP00000002833	ENSPCAP00000006298	Era like 12S mitochondrial rRNA chaperone 1.	Mitochondrial ribosomal protein S27.	0.996
ERAL1	MRPS6	ENSPCAP00000002833	ENSPCAP00000002132	Era like 12S mitochondrial rRNA chaperone 1.	Mitochondrial ribosomal protein S6.	0.984
ERAL1	MRPS7	ENSPCAP00000002833	ENSPCAP00000014879	Era like 12S mitochondrial rRNA chaperone 1.	Mitochondrial ribosomal protein S7.	0.996
ERAL1	MRPS9	ENSPCAP00000002833	ENSPCAP00000008242	Era like 12S mitochondrial rRNA chaperone 1.	Mitochondrial ribosomal protein S9.	0.985