SGSH protein (Procavia capensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SGSH

N-sulfoglucosamine sulfohydrolase. (469 aa)

Predicted Functional Partners:

SUMF1

0.972

ENSPCAP00000008530

0.945

HGSNAT

0.939

VPS18

0.852

MANBA

0.758

NOL10

0.755

IMP4

0.754

ENSPCAP00000013968

0.753

WDR36

0.753

BMS1

0.748

Your Current Organism:

Procavia capensis

NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BMS1	ENSPCAP00000013968	ENSPCAP00000013650	ENSPCAP00000013968	BMS1 ribosome biogenesis factor.	annotation not available	0.999
BMS1	IMP4	ENSPCAP00000013650	ENSPCAP00000010136	BMS1 ribosome biogenesis factor.	IMP U3 small nucleolar ribonucleoprotein 4.	0.999
BMS1	NOL10	ENSPCAP00000013650	ENSPCAP00000002532	BMS1 ribosome biogenesis factor.	Nucleolar protein 10.	0.999
BMS1	SGSH	ENSPCAP00000013650	ENSPCAP00000002883	BMS1 ribosome biogenesis factor.	N-sulfoglucosamine sulfohydrolase.	0.748
BMS1	WDR36	ENSPCAP00000013650	ENSPCAP00000014911	BMS1 ribosome biogenesis factor.	WD repeat domain 36.	0.999
ENSPCAP00000008530	HGSNAT	ENSPCAP00000008530	ENSPCAP00000012510	annotation not available	Heparan-alpha-glucosaminide N-acetyltransferase.	0.464
ENSPCAP00000008530	SGSH	ENSPCAP00000008530	ENSPCAP00000002883	annotation not available	N-sulfoglucosamine sulfohydrolase.	0.945
ENSPCAP00000008530	SUMF1	ENSPCAP00000008530	ENSPCAP00000004878	annotation not available	Sulfatase modifying factor 1.	0.493
ENSPCAP00000013968	BMS1	ENSPCAP00000013968	ENSPCAP00000013650	annotation not available	BMS1 ribosome biogenesis factor.	0.999
ENSPCAP00000013968	IMP4	ENSPCAP00000013968	ENSPCAP00000010136	annotation not available	IMP U3 small nucleolar ribonucleoprotein 4.	0.999
ENSPCAP00000013968	NOL10	ENSPCAP00000013968	ENSPCAP00000002532	annotation not available	Nucleolar protein 10.	0.999
ENSPCAP00000013968	SGSH	ENSPCAP00000013968	ENSPCAP00000002883	annotation not available	N-sulfoglucosamine sulfohydrolase.	0.753
ENSPCAP00000013968	WDR36	ENSPCAP00000013968	ENSPCAP00000014911	annotation not available	WD repeat domain 36.	0.999
HGSNAT	ENSPCAP00000008530	ENSPCAP00000012510	ENSPCAP00000008530	Heparan-alpha-glucosaminide N-acetyltransferase.	annotation not available	0.464
HGSNAT	SGSH	ENSPCAP00000012510	ENSPCAP00000002883	Heparan-alpha-glucosaminide N-acetyltransferase.	N-sulfoglucosamine sulfohydrolase.	0.939
HGSNAT	SUMF1	ENSPCAP00000012510	ENSPCAP00000004878	Heparan-alpha-glucosaminide N-acetyltransferase.	Sulfatase modifying factor 1.	0.400
IMP4	BMS1	ENSPCAP00000010136	ENSPCAP00000013650	IMP U3 small nucleolar ribonucleoprotein 4.	BMS1 ribosome biogenesis factor.	0.999
IMP4	ENSPCAP00000013968	ENSPCAP00000010136	ENSPCAP00000013968	IMP U3 small nucleolar ribonucleoprotein 4.	annotation not available	0.999
IMP4	NOL10	ENSPCAP00000010136	ENSPCAP00000002532	IMP U3 small nucleolar ribonucleoprotein 4.	Nucleolar protein 10.	0.999
IMP4	SGSH	ENSPCAP00000010136	ENSPCAP00000002883	IMP U3 small nucleolar ribonucleoprotein 4.	N-sulfoglucosamine sulfohydrolase.	0.754