TRIM40 protein (Procavia capensis) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

TRIM40

Tripartite motif containing 40. (226 aa)

Predicted Functional Partners:

NEDD8

0.708

ZFAND4

0.583

ENSPCAP00000003522

0.555

ENSPCAP00000015075

0.528

IFIH1

0.524

ICOS

0.524

ENSPCAP00000007408

0.523

UBE2L6

0.523

UBE2I

0.514

KCTD2

0.514

Your Current Organism:

Procavia capensis

NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPCAP00000003522	ENSPCAP00000007408	ENSPCAP00000003522	ENSPCAP00000007408	annotation not available	annotation not available	0.505
ENSPCAP00000003522	KCTD2	ENSPCAP00000003522	ENSPCAP00000014338	annotation not available	Potassium channel tetramerization domain containing 2.	0.504
ENSPCAP00000003522	NEDD8	ENSPCAP00000003522	ENSPCAP00000014958	annotation not available	NEDD8 ubiquitin like modifier.	0.846
ENSPCAP00000003522	TRIM40	ENSPCAP00000003522	ENSPCAP00000002895	annotation not available	Tripartite motif containing 40.	0.555
ENSPCAP00000003522	UBE2I	ENSPCAP00000003522	ENSPCAP00000007578	annotation not available	Ubiquitin conjugating enzyme E2 I.	0.504
ENSPCAP00000003522	UBE2L6	ENSPCAP00000003522	ENSPCAP00000010853	annotation not available	Ubiquitin conjugating enzyme E2 L6.	0.505
ENSPCAP00000003522	ZFAND4	ENSPCAP00000003522	ENSPCAP00000002765	annotation not available	Zinc finger AN1-type containing 4.	0.855
ENSPCAP00000007408	ENSPCAP00000003522	ENSPCAP00000007408	ENSPCAP00000003522	annotation not available	annotation not available	0.505
ENSPCAP00000007408	ENSPCAP00000015075	ENSPCAP00000007408	ENSPCAP00000015075	annotation not available	annotation not available	0.588
ENSPCAP00000007408	IFIH1	ENSPCAP00000007408	ENSPCAP00000007183	annotation not available	Interferon induced with helicase C domain 1.	0.588
ENSPCAP00000007408	NEDD8	ENSPCAP00000007408	ENSPCAP00000014958	annotation not available	NEDD8 ubiquitin like modifier.	0.879
ENSPCAP00000007408	TRIM40	ENSPCAP00000007408	ENSPCAP00000002895	annotation not available	Tripartite motif containing 40.	0.523
ENSPCAP00000007408	UBE2L6	ENSPCAP00000007408	ENSPCAP00000010853	annotation not available	Ubiquitin conjugating enzyme E2 L6.	0.786
ENSPCAP00000007408	ZFAND4	ENSPCAP00000007408	ENSPCAP00000002765	annotation not available	Zinc finger AN1-type containing 4.	0.743
ENSPCAP00000015075	ENSPCAP00000007408	ENSPCAP00000015075	ENSPCAP00000007408	annotation not available	annotation not available	0.588
ENSPCAP00000015075	IFIH1	ENSPCAP00000015075	ENSPCAP00000007183	annotation not available	Interferon induced with helicase C domain 1.	0.915
ENSPCAP00000015075	NEDD8	ENSPCAP00000015075	ENSPCAP00000014958	annotation not available	NEDD8 ubiquitin like modifier.	0.573
ENSPCAP00000015075	TRIM40	ENSPCAP00000015075	ENSPCAP00000002895	annotation not available	Tripartite motif containing 40.	0.528
ENSPCAP00000015075	UBE2L6	ENSPCAP00000015075	ENSPCAP00000010853	annotation not available	Ubiquitin conjugating enzyme E2 L6.	0.751
ENSPCAP00000015075	ZFAND4	ENSPCAP00000015075	ENSPCAP00000002765	annotation not available	Zinc finger AN1-type containing 4.	0.643