TRIM40 protein (Procavia capensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

TRIM40

Tripartite motif containing 40. (226 aa)

Predicted Functional Partners:

IKBKB

0.941

CHUK

0.941

ERC1

0.935

PYCARD

0.930

IFIT5

0.928

ENSPCAP00000015075

0.837

ERC2

0.770

IFIH1

0.621

RNF207

0.574

CSNK2B

0.572

Your Current Organism:

Procavia capensis

NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHUK	ENSPCAP00000015075	ENSPCAP00000003666	ENSPCAP00000015075	Component of inhibitor of nuclear factor kappa B kinase complex.	annotation not available	0.554
CHUK	ERC1	ENSPCAP00000003666	ENSPCAP00000006838	Component of inhibitor of nuclear factor kappa B kinase complex.	ELKS/RAB6-interacting/CAST family member 1.	0.972
CHUK	ERC2	ENSPCAP00000003666	ENSPCAP00000000818	Component of inhibitor of nuclear factor kappa B kinase complex.	ELKS/RAB6-interacting/CAST family member 2.	0.851
CHUK	IFIH1	ENSPCAP00000003666	ENSPCAP00000007183	Component of inhibitor of nuclear factor kappa B kinase complex.	Interferon induced with helicase C domain 1.	0.624
CHUK	IFIT5	ENSPCAP00000003666	ENSPCAP00000013632	Component of inhibitor of nuclear factor kappa B kinase complex.	Interferon induced protein with tetratricopeptide repeats 5.	0.961
CHUK	IKBKB	ENSPCAP00000003666	ENSPCAP00000002669	Component of inhibitor of nuclear factor kappa B kinase complex.	Inhibitor of nuclear factor kappa B kinase subunit beta.	0.999
CHUK	PYCARD	ENSPCAP00000003666	ENSPCAP00000004709	Component of inhibitor of nuclear factor kappa B kinase complex.	PYD and CARD domain containing.	0.945
CHUK	TRIM40	ENSPCAP00000003666	ENSPCAP00000002895	Component of inhibitor of nuclear factor kappa B kinase complex.	Tripartite motif containing 40.	0.941
CSNK2B	TRIM40	ENSPCAP00000012026	ENSPCAP00000002895	Casein kinase 2 beta.	Tripartite motif containing 40.	0.572
ENSPCAP00000015075	CHUK	ENSPCAP00000015075	ENSPCAP00000003666	annotation not available	Component of inhibitor of nuclear factor kappa B kinase complex.	0.554
ENSPCAP00000015075	ERC1	ENSPCAP00000015075	ENSPCAP00000006838	annotation not available	ELKS/RAB6-interacting/CAST family member 1.	0.533
ENSPCAP00000015075	ERC2	ENSPCAP00000015075	ENSPCAP00000000818	annotation not available	ELKS/RAB6-interacting/CAST family member 2.	0.533
ENSPCAP00000015075	IFIH1	ENSPCAP00000015075	ENSPCAP00000007183	annotation not available	Interferon induced with helicase C domain 1.	0.970
ENSPCAP00000015075	IFIT5	ENSPCAP00000015075	ENSPCAP00000013632	annotation not available	Interferon induced protein with tetratricopeptide repeats 5.	0.860
ENSPCAP00000015075	IKBKB	ENSPCAP00000015075	ENSPCAP00000002669	annotation not available	Inhibitor of nuclear factor kappa B kinase subunit beta.	0.535
ENSPCAP00000015075	PYCARD	ENSPCAP00000015075	ENSPCAP00000004709	annotation not available	PYD and CARD domain containing.	0.433
ENSPCAP00000015075	TRIM40	ENSPCAP00000015075	ENSPCAP00000002895	annotation not available	Tripartite motif containing 40.	0.837
ERC1	CHUK	ENSPCAP00000006838	ENSPCAP00000003666	ELKS/RAB6-interacting/CAST family member 1.	Component of inhibitor of nuclear factor kappa B kinase complex.	0.972
ERC1	ENSPCAP00000015075	ENSPCAP00000006838	ENSPCAP00000015075	ELKS/RAB6-interacting/CAST family member 1.	annotation not available	0.533
ERC1	ERC2	ENSPCAP00000006838	ENSPCAP00000000818	ELKS/RAB6-interacting/CAST family member 1.	ELKS/RAB6-interacting/CAST family member 2.	0.990