Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VBP1VHL binding protein 1. (197 aa)    
Predicted Functional Partners:
PFDN2
Prefoldin subunit 2.
   
 0.999
PFDN6
Prefoldin subunit 6.
   
 0.999
PFDN5
Prefoldin subunit 5.
   
 0.999
ENSPCAP00000012792
annotation not available
   
 0.999
PFDN1
Prefoldin subunit 1.
   
 0.999
PDRG1
P53 and DNA damage regulated 1.
    
 0.993
CCT7
Chaperonin containing TCP1 subunit 7.
   
 0.948
VHL
Von Hippel-Lindau tumor suppressor.
    
 
 0.924
TCP1
T-complex 1.
   
 0.920
CCT4
Chaperonin containing TCP1 subunit 4.
   
 0.905
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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