SSBP1 protein (Procavia capensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SSBP1

Single stranded DNA binding protein 1. (148 aa)

Predicted Functional Partners:

MRPS6

0.980

ENSPCAP00000002344

0.935

MRPL21

0.908

RPS20

0.907

MRPS10

0.891

MRPS12

0.886

TOP3B

0.878

TOP3A

0.878

EIF1AX

0.875

ENSPCAP00000013223

0.842

Your Current Organism:

Procavia capensis

NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EIF1AX	ENSPCAP00000013223	ENSPCAP00000008533	ENSPCAP00000013223	Eukaryotic translation initiation factor 1A X-linked.	annotation not available	0.995
EIF1AX	MRPL21	ENSPCAP00000008533	ENSPCAP00000003218	Eukaryotic translation initiation factor 1A X-linked.	Mitochondrial ribosomal protein L21.	0.951
EIF1AX	MRPS10	ENSPCAP00000008533	ENSPCAP00000003782	Eukaryotic translation initiation factor 1A X-linked.	Mitochondrial ribosomal protein S10.	0.997
EIF1AX	MRPS12	ENSPCAP00000008533	ENSPCAP00000010061	Eukaryotic translation initiation factor 1A X-linked.	Mitochondrial ribosomal protein S12.	0.999
EIF1AX	MRPS6	ENSPCAP00000008533	ENSPCAP00000002132	Eukaryotic translation initiation factor 1A X-linked.	Mitochondrial ribosomal protein S6.	0.978
EIF1AX	RPS20	ENSPCAP00000008533	ENSPCAP00000003996	Eukaryotic translation initiation factor 1A X-linked.	Ribosomal protein S20.	0.999
EIF1AX	SSBP1	ENSPCAP00000008533	ENSPCAP00000003152	Eukaryotic translation initiation factor 1A X-linked.	Single stranded DNA binding protein 1.	0.875
ENSPCAP00000002344	MRPS12	ENSPCAP00000002344	ENSPCAP00000010061	annotation not available	Mitochondrial ribosomal protein S12.	0.527
ENSPCAP00000002344	MRPS6	ENSPCAP00000002344	ENSPCAP00000002132	annotation not available	Mitochondrial ribosomal protein S6.	0.529
ENSPCAP00000002344	SSBP1	ENSPCAP00000002344	ENSPCAP00000003152	annotation not available	Single stranded DNA binding protein 1.	0.935
ENSPCAP00000002344	TOP3A	ENSPCAP00000002344	ENSPCAP00000010927	annotation not available	DNA topoisomerase III alpha.	0.661
ENSPCAP00000002344	TOP3B	ENSPCAP00000002344	ENSPCAP00000005642	annotation not available	DNA topoisomerase III beta.	0.661
ENSPCAP00000013223	EIF1AX	ENSPCAP00000013223	ENSPCAP00000008533	annotation not available	Eukaryotic translation initiation factor 1A X-linked.	0.995
ENSPCAP00000013223	MRPL21	ENSPCAP00000013223	ENSPCAP00000003218	annotation not available	Mitochondrial ribosomal protein L21.	0.994
ENSPCAP00000013223	MRPS10	ENSPCAP00000013223	ENSPCAP00000003782	annotation not available	Mitochondrial ribosomal protein S10.	0.999
ENSPCAP00000013223	MRPS12	ENSPCAP00000013223	ENSPCAP00000010061	annotation not available	Mitochondrial ribosomal protein S12.	0.999
ENSPCAP00000013223	MRPS6	ENSPCAP00000013223	ENSPCAP00000002132	annotation not available	Mitochondrial ribosomal protein S6.	0.999
ENSPCAP00000013223	RPS20	ENSPCAP00000013223	ENSPCAP00000003996	annotation not available	Ribosomal protein S20.	0.992
ENSPCAP00000013223	SSBP1	ENSPCAP00000013223	ENSPCAP00000003152	annotation not available	Single stranded DNA binding protein 1.	0.842
ENSPCAP00000013223	TOP3A	ENSPCAP00000013223	ENSPCAP00000010927	annotation not available	DNA topoisomerase III alpha.	0.432