Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSBP1Single stranded DNA binding protein 1. (148 aa)    
Predicted Functional Partners:
INTS3
Integrator complex subunit 3.
    
 
 0.959
CLPP
Caseinolytic mitochondrial matrix peptidase proteolytic subunit.
  
 0.947
ENSPCAP00000013223
annotation not available
   
 0.946
POLG
DNA polymerase gamma, catalytic subunit.
   
 0.936
MRPS6
Mitochondrial ribosomal protein S6.
  
  
 0.925
MRPL11
Mitochondrial ribosomal protein L11.
  
 
 0.913
MRPL35
Mitochondrial ribosomal protein L35.
   
 
 0.905
MSH6
mutS homolog 6.
    
 
 0.902
ENSPCAP00000005151
annotation not available
    
 0.898
ENSPCAP00000002344
annotation not available
   
 0.897
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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