STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TDP2tyrosyl-DNA phosphodiesterase 2. (363 aa)    
Predicted Functional Partners:
SUMO1
Small ubiquitin like modifier 1.
   
 
 0.757
ENSPCAP00000014776
annotation not available
   
 
 0.721
XRCC6
X-ray repair cross complementing 6.
     
 0.707
UBC
Ubiquitin C.
    
 
 0.692
XRCC5
X-ray repair cross complementing 5.
     
 0.664
PRKDC
Protein kinase, DNA-activated, catalytic subunit.
     
 0.611
DCLRE1C
DNA cross-link repair 1C.
     
 0.607
TDP1
tyrosyl-DNA phosphodiesterase 1.
   
  
 0.605
ORC2
Origin recognition complex subunit 2.
      
 0.580
DCLRE1A
DNA cross-link repair 1A.
     
 0.565
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.