STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATG4CAutophagy related 4C cysteine peptidase. (457 aa)    
Predicted Functional Partners:
ATG4A
Autophagy related 4A cysteine peptidase.
    
 0.968
ENSPCAP00000012454
annotation not available
   
 0.965
GABARAPL1
GABA type A receptor associated protein like 1.
   
 0.959
GABARAP
GABA type A receptor-associated protein.
   
 0.959
ENSPCAP00000000913
annotation not available
   
 0.945
ENSPCAP00000002915
annotation not available
   
 0.945
ATG4B
Autophagy related 4B cysteine peptidase.
    
 0.915
ATG4D
Autophagy related 4D cysteine peptidase.
    
 0.873
ATG3
Autophagy related 3.
   
 
 0.862
ATG7
Autophagy related 7.
   
 
 0.780
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.