Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DDX39BDExD-box helicase 39B. (283 aa)    
Predicted Functional Partners:
THOC2
THO complex 2.
   
 0.993
THOC1
THO complex 1.
   
 0.992
THOC3
THO complex 3.
    
 0.992
THOC7
THO complex 7.
   
 0.991
THOC6
THO complex 6.
   
 0.991
THOC5
THO complex 5.
   
 0.990
SARNP
SAP domain containing ribonucleoprotein.
   
 0.990
ENSPCAP00000015256
annotation not available
   
 0.990
ALYREF
Aly/REF export factor.
   
 0.988
EIF4A3
Eukaryotic translation initiation factor 4A3.
  
0.969
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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