Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MDH1Malate dehydrogenase 1. (209 aa)    
Predicted Functional Partners:
MDH2
Malate dehydrogenase 2.
   
 0.992
FH
Fumarate hydratase.
  
 0.966
GOT1
Glutamic-oxaloacetic transaminase 1.
   
 0.963
GOT2
Glutamic-oxaloacetic transaminase 2.
   
 0.956
ACLY
ATP citrate lyase.
  
 0.944
PC
Pyruvate carboxylase.
  
 0.939
GOT1L1
Glutamic-oxaloacetic transaminase 1 like 1.
   
 0.933
ME3
Malic enzyme 3.
  
 0.931
ME1
Malic enzyme 1.
  
 0.931
ME2
Malic enzyme 2.
  
 0.930
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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