Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LYL1LYL1 basic helix-loop-helix family member. (284 aa)    
Predicted Functional Partners:
TCF3
Transcription factor 3.
    
 0.956
TCF12
Transcription factor 12.
    
 0.901
TCF4
Transcription factor 4.
    
 0.901
ENSPCAP00000003966
annotation not available
   
 0.812
LDB1
LIM domain binding 1.
    
 0.759
LDB2
LIM domain binding 2.
    
 0.712
GATA2
GATA binding protein 2.
   
 0.633
EP300
E1A binding protein p300.
    
 0.609
TAL1
TAL bHLH transcription factor 1, erythroid differentiation factor.
   
 
 0.602
LMO3
LIM domain only 3.
    
 0.589
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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