SVBP protein (Procavia capensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

SVBP

Small vasohibin binding protein. (66 aa)

Predicted Functional Partners:

VASH1

0.993

VASH2

0.985

ENSPCAP00000003757

0.742

TUBB6

0.701

ENSPCAP00000008690

0.692

BCS1L

0.648

ENSPCAP00000012053

0.643

TTLL7

0.609

ENSPCAP00000002190

0.584

KIAA0895L

0.573

Your Current Organism:

Procavia capensis

NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BCS1L	SVBP	ENSPCAP00000010836	ENSPCAP00000003449	BCS1 homolog, ubiquinol-cytochrome c reductase complex chaperone.	Small vasohibin binding protein.	0.648
ENSPCAP00000002190	ENSPCAP00000003757	ENSPCAP00000002190	ENSPCAP00000003757	annotation not available	annotation not available	0.816
ENSPCAP00000002190	ENSPCAP00000008690	ENSPCAP00000002190	ENSPCAP00000008690	annotation not available	annotation not available	0.449
ENSPCAP00000002190	SVBP	ENSPCAP00000002190	ENSPCAP00000003449	annotation not available	Small vasohibin binding protein.	0.584
ENSPCAP00000002190	TUBB6	ENSPCAP00000002190	ENSPCAP00000013306	annotation not available	Tubulin beta 6 class V.	0.576
ENSPCAP00000002190	VASH1	ENSPCAP00000002190	ENSPCAP00000001678	annotation not available	Vasohibin 1.	0.412
ENSPCAP00000002190	VASH2	ENSPCAP00000002190	ENSPCAP00000010052	annotation not available	Vasohibin 2.	0.465
ENSPCAP00000003757	ENSPCAP00000002190	ENSPCAP00000003757	ENSPCAP00000002190	annotation not available	annotation not available	0.816
ENSPCAP00000003757	ENSPCAP00000008690	ENSPCAP00000003757	ENSPCAP00000008690	annotation not available	annotation not available	0.695
ENSPCAP00000003757	ENSPCAP00000012053	ENSPCAP00000003757	ENSPCAP00000012053	annotation not available	annotation not available	0.454
ENSPCAP00000003757	KIAA0895L	ENSPCAP00000003757	ENSPCAP00000012209	annotation not available	KIAA0895 like.	0.893
ENSPCAP00000003757	SVBP	ENSPCAP00000003757	ENSPCAP00000003449	annotation not available	Small vasohibin binding protein.	0.742
ENSPCAP00000003757	TUBB6	ENSPCAP00000003757	ENSPCAP00000013306	annotation not available	Tubulin beta 6 class V.	0.932
ENSPCAP00000003757	VASH1	ENSPCAP00000003757	ENSPCAP00000001678	annotation not available	Vasohibin 1.	0.742
ENSPCAP00000008690	ENSPCAP00000002190	ENSPCAP00000008690	ENSPCAP00000002190	annotation not available	annotation not available	0.449
ENSPCAP00000008690	ENSPCAP00000003757	ENSPCAP00000008690	ENSPCAP00000003757	annotation not available	annotation not available	0.695
ENSPCAP00000008690	SVBP	ENSPCAP00000008690	ENSPCAP00000003449	annotation not available	Small vasohibin binding protein.	0.692
ENSPCAP00000008690	TUBB6	ENSPCAP00000008690	ENSPCAP00000013306	annotation not available	Tubulin beta 6 class V.	0.695
ENSPCAP00000008690	VASH1	ENSPCAP00000008690	ENSPCAP00000001678	annotation not available	Vasohibin 1.	0.887
ENSPCAP00000008690	VASH2	ENSPCAP00000008690	ENSPCAP00000010052	annotation not available	Vasohibin 2.	0.594