ENSPCAP00000003677 protein (Procavia capensis)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

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Textmining

[Homology]

Score

ENSPCAP00000003677

annotation not available (450 aa)

Predicted Functional Partners:

ENSPCAP00000000682

0.848

ENSPCAP00000000508

0.692

TMCO5A

0.692

ZFAND4

0.590

ENSPCAP00000009374

0.590

ENSPCAP00000004653

0.567

ENSPCAP00000004704

0.567

SPATA16

0.496

PKD1

0.481

ENSPCAP00000000446

0.474

Your Current Organism:

Procavia capensis

NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPCAP00000000446	ENSPCAP00000000508	ENSPCAP00000000446	ENSPCAP00000000508	annotation not available	annotation not available	0.474
ENSPCAP00000000446	ENSPCAP00000000682	ENSPCAP00000000446	ENSPCAP00000000682	annotation not available	annotation not available	0.692
ENSPCAP00000000446	ENSPCAP00000003677	ENSPCAP00000000446	ENSPCAP00000003677	annotation not available	annotation not available	0.474
ENSPCAP00000000446	ENSPCAP00000004653	ENSPCAP00000000446	ENSPCAP00000004653	annotation not available	annotation not available	0.575
ENSPCAP00000000446	ENSPCAP00000004704	ENSPCAP00000000446	ENSPCAP00000004704	annotation not available	annotation not available	0.575
ENSPCAP00000000446	TMCO5A	ENSPCAP00000000446	ENSPCAP00000013677	annotation not available	Transmembrane and coiled-coil domains 5A.	0.474
ENSPCAP00000000508	ENSPCAP00000000446	ENSPCAP00000000508	ENSPCAP00000000446	annotation not available	annotation not available	0.474
ENSPCAP00000000508	ENSPCAP00000000682	ENSPCAP00000000508	ENSPCAP00000000682	annotation not available	annotation not available	0.830
ENSPCAP00000000508	ENSPCAP00000003677	ENSPCAP00000000508	ENSPCAP00000003677	annotation not available	annotation not available	0.692
ENSPCAP00000000508	ENSPCAP00000004653	ENSPCAP00000000508	ENSPCAP00000004653	annotation not available	annotation not available	0.565
ENSPCAP00000000508	ENSPCAP00000004704	ENSPCAP00000000508	ENSPCAP00000004704	annotation not available	annotation not available	0.565
ENSPCAP00000000508	ENSPCAP00000009374	ENSPCAP00000000508	ENSPCAP00000009374	annotation not available	annotation not available	0.692
ENSPCAP00000000508	PKD1	ENSPCAP00000000508	ENSPCAP00000003596	annotation not available	Polycystin 1, transient receptor potential channel interacting.	0.478
ENSPCAP00000000508	SPATA16	ENSPCAP00000000508	ENSPCAP00000013581	annotation not available	Spermatogenesis associated 16.	0.495
ENSPCAP00000000508	TMCO5A	ENSPCAP00000000508	ENSPCAP00000013677	annotation not available	Transmembrane and coiled-coil domains 5A.	0.692
ENSPCAP00000000508	ZFAND4	ENSPCAP00000000508	ENSPCAP00000002765	annotation not available	Zinc finger AN1-type containing 4.	0.581
ENSPCAP00000000682	ENSPCAP00000000446	ENSPCAP00000000682	ENSPCAP00000000446	annotation not available	annotation not available	0.692
ENSPCAP00000000682	ENSPCAP00000000508	ENSPCAP00000000682	ENSPCAP00000000508	annotation not available	annotation not available	0.830
ENSPCAP00000000682	ENSPCAP00000003677	ENSPCAP00000000682	ENSPCAP00000003677	annotation not available	annotation not available	0.848
ENSPCAP00000000682	ENSPCAP00000004653	ENSPCAP00000000682	ENSPCAP00000004653	annotation not available	annotation not available	0.572